BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356828
Length=762
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42900.1 | Symbols: COR27 | cold regulated gene 27 | chr5:17... 1016 0.0
> AT5G42900.1 | Symbols: COR27 | cold regulated gene 27 | chr5:17197641-17199793
REVERSE LENGTH=1054
Length=1054
Score = 1016 bits (550), Expect = 0.0
Identities = 704/771 (91%), Gaps = 39/771 (5%)
Strand=Plus/Plus
Query 1 ATGGTTGGTGATTACAGAGGACGCTTTAGTAGCCGTCGTTGCTCCGACGACTCTGACGAT 60
|||||||||||||||||||||||||||||||||||||||| || | ||| ||||
Sbjct 82 ATGGTTGGTGATTACAGAGGACGCTTTAGTAGCCGTCGTTTCT-C--CGA---TGAC--- 132
Query 61 TCTTCCGACGATGCTTCTTCCGTGGAGGGAGAGACCGCTTCTTCCGTGGAGGGAGAGACC 120
|| | ||||| ||||||| || || ||||||||||||||||||||||||
Sbjct 133 TC-T--GACGA---TTCTTCC-------GA-CGA-TGCTTCTTCCGTGGAGGGAGAGACC 177
Query 121 ACTTCTTCCATGTACTCTGCGGGGAAAGAGTATATGGAAACAGAATGGACTAATGAGAAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ACTTCTTCCATGTACTCTGCGGGGAAAGAGTATATGGAAACAGAATGGACTAATGAGAAG 237
Query 181 CATAGTTTATATCTTAAATCTATGGAAGCTTCATTCGTAGATCAGTTATATAACTCTCTC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 238 CATAGTTTATATCTTAAATCTATGGAAGCTTCATTCGTAGATCAGTTATATAACTCGCTC 297
Query 241 GGAGCTCTGGGGAAGAACGAGAATGTATCGGAATCGACGAGGTTCGGTAGCGGTAGAAAA 300
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 298 GGAGCTCTCGGGAAGAACGAGAATGTATCCGAATCAACGAGGTTCGGTAGCGGTAGAAAA 357
Query 301 CCGTCTCAAGAGCAGTTCAAGGTTCTTCATGATGGTTTCTGGCAGAAGATTAATGTTAAA 360
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 358 CCGTCTCAAGAACAGTTCAAGGTTCTTCATGATGGTTTCTGGCAGAAGATTAATGTGAAA 417
Query 361 CAACCTGAACATCGGATTAACGGAAGACACGGTAGT--T-CTCATGAGTTTCTTAGGAGT 417
|||||||||||||||||||||||||| |||||| || | ||||||||||||||||||||
Sbjct 418 CAACCTGAACATCGGATTAACGGAAGGCACGGTGGTAATTCTCATGAGTTTCTTAGGAGT 477
Query 418 CCATGGATTAAGCATTATAAACCTTTAGTAAAGACGCAAATTTCGGTAATGGATGCGCCC 477
||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||
Sbjct 478 CCATGGATTAAGCATTATAAACCTTTAGTAAAGACACAAATCCCGGTAACGGATGAGCCC 537
Query 478 GAAAATCAAGTTGTTAGCAGCTCAAATGGGAAGAAGGTAATAGTTATATGCAGCTCTGGT 537
||||||||||||||||||||||| ||||||||||||| |||| | ||||||||||
Sbjct 538 GAAAATCAAGTTGTTAGCAGCTCTAATGGGAAGAAGGGAATA-T-----GCAGCTCTGGC 591
Query 538 TCAGCCTCGAATCTCAAGCAGATATGCTCTCATTCGCGTGACCACGACCAAATCAGCGTT 597
|||||||| | |||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 592 TCAGCCTCTAGTCTCAAGCAGCTAAGCTCTCATTCGCGTGACCACGACCAAATCAGCGTT 651
Query 598 GGAGAAG-AG-G-TATCGGATCAGAACTTTGTTAACGAAGGAACAAAAGGCGAAAATGGA 654
||||||| || | |||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 652 GGAGAAGCAGAGGTATCGGATCAGAACTTTGTTAACGAAGGAATAAAAGGCGAAAACGGA 711
Query 655 AGCTCGAAGAAGATGAAGACAGTGATGA-G--TGAATCGTCTAGTACCGATCAGGTTGTT 711
|||||||||||||||||||| ||||||| | ||||||||| ||||||||||||||||||
Sbjct 712 AGCTCGAAGAAGATGAAGACGGTGATGATGAGTGAATCGTCGAGTACCGATCAGGTTGTT 771
Query 712 CCACTCAATAAACTCTTGCAACATGACATAAATTTGAAGTCTGTTTCTTGA 762
||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 772 CCACTCAATAAACTCTTGCAACATGACGTAAATTTGAAGTCTGTTTCTTGA 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37022566339
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5