BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg356872

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G39880.1 | Symbols:  | Ribosomal protein L23/L15e family pro...   169    2e-41


> AT4G39880.1 | Symbols:  | Ribosomal protein L23/L15e family protein 
| chr4:18504537-18505338 FORWARD LENGTH=802
Length=802

 Score =  169 bits (91),  Expect = 2e-41
 Identities = 151/178 (85%), Gaps = 12/178 (7%)
 Strand=Plus/Plus

Query  137  GGAAGA-A-GAAGAGTAAAGTGATAA-GAGT-TAGCTTTGTTGAGGAAGAAGATGATAAG  192
            |||||| | |||||||||||||| || || | ||||||||||||||||||||||||||||
Sbjct  379  GGAAGATAGGAAGAGTAAAGTGA-AAGGA-TCTAGCTTTGTTGAGGAAGAAGATGATAAG  436

Query  193  AAGTATCATCATTGGCTTGATCGCAAGGAGAAGTGGGAAATCGC-GGTTATGGTAAAGGT  251
            ||| |   ||||||||||||||| ||||||||| |||| || |  |||||||||||||||
Sbjct  437  AAG-AG--TCATTGGCTTGATCGTAAGGAGAAGAGGGAGATTGGTGGTTATGGTAAAGGT  493

Query  252  AAAGATCGTGGTGGTGGTGAAAGAGCTAATTCTTCGACGAG-GACTGGTTTTGCGGCG  308
            |||| |||| | ||||||||||| ||||| ||| ||||||| |  ||||  |||||||
Sbjct  494  AAAGGTCGTCGAGGTGGTGAAAGGGCTAACTCTCCGACGAGAGG-TGGTGCTGCGGCG  550



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15080324700


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5