BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356893
Length=483
Score E
Sequences producing significant alignments: (Bits) Value
AT1G66750.1 | Symbols: CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2, CAK4... 302 3e-81
AT4G04720.1 | Symbols: CPK21 | calcium-dependent protein kinase... 207 6e-53
AT5G60620.1 | Symbols: GPAT9 | glycerol-3-phosphate acyltransfe... 196 1e-49
AT4G04740.2 | Symbols: CPK23 | calcium-dependent protein kinase... 163 1e-39
AT2G17290.1 | Symbols: CPK6, ATCDPK3, ATCPK6 | Calcium-dependen... 65.8 4e-10
> AT1G66750.1 | Symbols: CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2, CAK4
| CDK-activating kinase 4 | chr1:24894715-24897253 FORWARD
LENGTH=1345
Length=1345
Score = 302 bits (163), Expect = 3e-81
Identities = 186/197 (94%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 140 TGTTTGGTAGTCGACAGTATGGAGCAGGAGTTGATGTCTGGGCTGCAGGCTGTATCTTTG 199
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 605 TGTTTGGGAGTCGACAGTATGGAGCAGGAGTTGATGTTTGGGCTGCAGGCTGTATTTTTG 664
Query 200 CTGAGCTATTACTTCGTAGACCATTTCTTCCGGGTTCTACTGAGATTGATCAACTTAGG- 258
||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 665 CTGAGTTACTACTTCGTAGACCATTTCTTCCGGGTTCTACTGAGATTGATCAACTT-GGA 723
Query 259 AAGATCTTTCAAGCCTTTGGAACTCCAGTACCTTCTCAATGGTATGACATGATCTATCTC 318
|||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||||||
Sbjct 724 AAGATCTTTCAAGCGTTTGGTACTCCAGTACCTTCCCAATGGTCTGACATGATCTATCTC 783
Query 319 CCAGACTACATGGAATT 335
|||||||||||||||||
Sbjct 784 CCAGACTACATGGAATT 800
> AT4G04720.1 | Symbols: CPK21 | calcium-dependent protein kinase
21 | chr4:2394458-2397759 REVERSE LENGTH=2083
Length=2083
Score = 207 bits (112), Expect = 6e-53
Identities = 127/134 (95%), Gaps = 1/134 (1%)
Strand=Plus/Plus
Query 1 ATGCAGTATTTGTCTGGACAACCAAATATTGTTGAGATTAAAGGTGCTTATGAATATAGA 60
||||||||||||||||||||||| || ||||||||||| ||||||||||||||| |||||
Sbjct 522 ATGCAGTATTTGTCTGGACAACCTAACATTGTTGAGATCAAAGGTGCTTATGAAGATAGA 581
Query 61 CAATCTGTGCATTTGGTTATGGAGTTGTGTGCTGGTGGTGAGTTGTTTGATAGGATTATA 120
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 CAATCTATACATTTGGTTATGGAGTTGTGTGCTGGTGGTGAGTTGTTTGATAGGATTATA 641
Query 121 GCTCAAGGTCTATT 134
|||||||||| |||
Sbjct 642 GCTCAAGGTC-ATT 654
> AT5G60620.1 | Symbols: GPAT9 | glycerol-3-phosphate acyltransferase
9 | chr5:24367198-24369790 FORWARD LENGTH=1342
Length=1342
Score = 196 bits (106), Expect = 1e-49
Identities = 117/122 (96%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 346 GTGTGGTACTTGGAACCTCAAACCATAAGGCCCGGTGAAACA-GAGATTGAGTTTGCAGA 404
||||||||||||||||| |||||||||||||||||||||||| || ||||| ||||||||
Sbjct 990 GTGTGGTACTTGGAACCACAAACCATAAGGCCCGGTGAAACAGGA-ATTGAATTTGCAGA 1048
Query 405 GAGGGTAAGAGACATGATATCTCTTCGGGCGGGTCTCAAAAAGGTCCCTTGGGATGGATA 464
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 GAGGGTCAGAGACATGATATCTCTTCGGGCGGGTCTCAAAAAGGTCCCTTGGGATGGATA 1108
Query 465 CT 466
||
Sbjct 1109 CT 1110
> AT4G04740.2 | Symbols: CPK23 | calcium-dependent protein kinase
23 | chr4:2403609-2408737 REVERSE LENGTH=2518
Length=2518
Score = 163 bits (88), Expect = 1e-39
Identities = 119/134 (89%), Gaps = 1/134 (1%)
Strand=Plus/Plus
Query 1 ATGCAGTATTTGTCTGGACAACCAAATATTGTTGAGATTAAAGGTGCTTATGAATATAGA 60
|||||| ||||||||||||||||||| |||||||||| |||||| |||||||| | |||
Sbjct 605 ATGCAGCATTTGTCTGGACAACCAAACGTTGTTGAGATCAAAGGTTCTTATGAAGACAGA 664
Query 61 CAATCTGTGCATTTGGTTATGGAGTTGTGTGCTGGTGGTGAGTTGTTTGATAGGATTATA 120
|| ||||| |||||||| ||||| || ||||| ||||| |||||||||||||||||||||
Sbjct 665 CATTCTGTACATTTGGTAATGGAATTATGTGCCGGTGGAGAGTTGTTTGATAGGATTATA 724
Query 121 GCTCAAGGTCTATT 134
|||||||||| |||
Sbjct 725 GCTCAAGGTC-ATT 737
> AT2G17290.1 | Symbols: CPK6, ATCDPK3, ATCPK6 | Calcium-dependent
protein kinase family protein | chr2:7516415-7519633 FORWARD
LENGTH=2332
Length=2332
Score = 65.8 bits (35), Expect = 4e-10
Identities = 40/42 (95%), Gaps = 2/42 (5%)
Strand=Plus/Plus
Query 79 ATGGAG-TTGTGTGCTGGTGGTGAGTTGTTTGATAGGATTAT 119
|||||| || ||||||||||||||||||||||||||||||||
Sbjct 790 ATGGAGCTT-TGTGCTGGTGGTGAGTTGTTTGATAGGATTAT 830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23007239326
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5