BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg356894

Length=822
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G24220.1 | Symbols: NCED6, ATNCED6 | nine-cis-epoxycarotenoi...   562    2e-159


> AT3G24220.1 | Symbols: NCED6, ATNCED6 | nine-cis-epoxycarotenoid 
dioxygenase 6 | chr3:8761434-8763172 FORWARD LENGTH=1739
Length=1739

 Score =  562 bits (304),  Expect = 2e-159
 Identities = 377/413 (91%), Gaps = 1/413 (0%)
 Strand=Plus/Plus

Query  1     ATGTCAGAGGATGATCTTCCTTACCAAGTGAAAATCAACGGTCAAGGAGATCTTGAGACA  60
             |||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| 
Sbjct  723   ATGTCAGAAGATGATCTTCCTTACCAAGTGAAGATCGACGGTCAAGGAGATCTTGAGACG  782

Query  61    ATCGGACGGTTTGGATTTGATGATCAGATTGACTGTTTAGTGATAGCTCATTCTAAGGTG  120
             ||||||||||| ||||| ||||| |||||||||| || ||||||||| ||| ||||||||
Sbjct  783   ATCGGACGGTTCGGATTCGATGACCAGATTGACTCTTCAGTGATAGCGCATCCTAAGGTG  842

Query  121   GACGCTACCACAGGAGATCTCCACACTCTGAGCTACAATGTTTTGAGGAAACCTCATCTC  180
             ||||| ||||||||||||||||| || ||||||||||| ||||||| |||||||||||||
Sbjct  843   GACGCGACCACAGGAGATCTCCATACACTGAGCTACAACGTTTTGAAGAAACCTCATCTC  902

Query  181   ATGTATCTTAAATTCGACACGTGCGGGAAAAAGACACGTGACGTGGACATCACGCTCCCG  240
             | ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| 
Sbjct  903   AGGTATCTTAAATTCAACACGTGCGGGAAAAAGACACGTGACGTGGAGATCACGCTCCCT  962

Query  241   GAACCAACGATGATTCATGATTTTGCGATAACCGAAAATTTTGTCGTCATACCGGATCAG  300
             ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct  963   GAACCAACGATGATTCATGATTTCGCGATAACCGAGAATTTTGTCGTTATACCGGATCAG  1022

Query  301   CAAATGGTATTCAAATTAACCGAAATGATCCGGGGCGGGTCACCGGTTATCTATGATAAA  360
             |||||||||||||||||| |||||||||| |||||||||||||| |||||||| | ||||
Sbjct  1023  CAAATGGTATTCAAATTATCCGAAATGATTCGGGGCGGGTCACCCGTTATCTACGTTAAA  1082

Query  361   GAGAAAATGTCGAGATTCGGGGTTTTGTCAAAGCAA-ATCAGACCGGTTCGGA  412
             || |||||| ||||||| || ||||||||||||||  ||| |||||| |||||
Sbjct  1083  GAAAAAATGGCGAGATTTGGAGTTTTGTCAAAGCAGGATCTGACCGGGTCGGA  1135



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40036615159


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5