BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356912
Length=1578
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42350.1 | Symbols: | Galactose oxidase/kelch repeat superf... 2154 0.0
AT5G42360.1 | Symbols: | Galactose oxidase/kelch repeat superf... 2121 0.0
> AT5G42350.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:16931534-16934003 FORWARD LENGTH=2120
Length=2120
Score = 2154 bits (1166), Expect = 0.0
Identities = 1440/1571 (92%), Gaps = 23/1571 (1%)
Strand=Plus/Plus
Query 1 ATGATGATTTCTGAGATACCGCTGGGA---GAGGAGTCTATCCGGCAGGATCTTGAGGTT 57
|||||||||||||||| ||| ||||| ||||||||||| ||||||||||| ||||||
Sbjct 223 ATGATGATTTCTGAGAAACCATTGGGAGTGGAGGAGTCTATACGGCAGGATCTGGAGGTT 282
Query 58 TTAACCATGTCGAA-GCGGCTTGTGAAAAGTGTTAGCCAGAAGTTGAAGAAAAAGATTCA 116
|||||| |||| || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 TTAACCGTGTC-AAGGAGGCTTGTGAAAAGTGTTAGCCAGAAGTTGAAGAAAAAGATTCA 341
Query 117 TAAATCTGAGGTGGTGGAAGATGAAGTGGA-TGCAAGGGGAGCGGTTAATTGTCTAAGCA 175
|||| ||||||||||||||||||||| || ||||||||||||||| |||||| |||| |
Sbjct 342 TAAAACTGAGGTGGTGGAAGATGAAG-AGATTGCAAGGGGAGCGGTGAATTGTTTAAGTA 400
Query 176 TCAGTGTTAGTTGCAGAGTTGCTGATACAGGTGAGAATTTTGAGGA-TCGTACTGATAAG 234
|||||||| ||||||||||||||||||| |||||| |||||||||| || | | |||||
Sbjct 401 TCAGTGTTGGTTGCAGAGTTGCTGATACGGGTGAGGATTTTGAGGATTC-AAGTAATAAG 459
Query 235 AGGTTTTCCAGTGCTAGTGAGGAGGGTAAGGGATTATTGATGACCATTTGTGGAACTGAA 294
|| | || ||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 460 AGATGGTCTAGTGCTAGTGAGGAGGGTAAGGG---ATTGATGACAATTTGTGGAACTGAA 516
Query 295 GAAACTAGGTTGGATTGCTTTTCTTATGGGGTTAAAGAGAGGTTCTGGAAGAAGAATAAT 354
||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 517 GAAACTAGGTTAGATTGTTTTTCTTATGGGGTTAGAGAGAGGTTCTGGAAGAAGAATAAT 576
Query 355 AGAAAATATTTAGTC-GACTCGGCCCAGGATTATCGGAAGCACATATT-CCTTCCCGATG 412
||||||||| ||| | ||||||| ||||||||| || |||||| | || ||||||||||
Sbjct 577 AGAAAATATCTAG-CAGACTCGGGCCAGGATTACCGCAAGCACGT-TTATCTTCCCGATG 634
Query 413 ATATTCTTGAAATGTGCTTGATGAGGCTTCCTTTGACCAGCCTATTGAATGCACAGCTTG 472
||||||| |||||||| |||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 635 ATATTCTGGAAATGTGTTTGATGAGGCTTCCTTTGACCAGCTTATTGAATGCACACCTTG 694
Query 473 TTTGCAAGAAATGGCGATCCATGGCCACCAAC-CAACGGTTTCTCCAGATTAGACGAGAA 531
||||||||||||||| ||||||||||| | || || |||||||||||||| |||||||||
Sbjct 695 TTTGCAAGAAATGGCAATCCATGGCCAAC-ACTCAGCGGTTTCTCCAGATGAGACGAGAA 753
Query 532 GGCTCCTTTCAAACCCCATGGTTCTTTCTGTTTGCTGCTCTTAAAGATGGCTGCTCCTCT 591
|||||||||||||| || ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 754 GGCTCCTTTCAAACACCGTGGTTGTTTCTGTTTGCTGCTCTTAAAGATGGATGCTCCTCT 813
Query 592 GGTGAAATTCACGGGTATGATGTATCTCAAGAAAAATGGCATAGTATTGAATCTGATCTA 651
||||| ||||||||||||||||| ||||| || ||||||||||| |||||| ||||||||
Sbjct 814 GGTGATATTCACGGGTATGATGTTTCTCAGGACAAATGGCATAGGATTGAAACTGATCTA 873
Query 652 CTTAAAGGGCGGTATATGTACTCCGTGACGAGCATCCATGCGGAGATTTATGTAATTGGA 711
|||||||| |||| ||||||||| |||||||||||||||| |||||||||| || |||||
Sbjct 874 CTTAAAGGCCGGTTTATGTACTCTGTGACGAGCATCCATGAGGAGATTTATATAGTTGGA 933
Query 712 GGTCGTTCTACGGATAGGAACTCTTTCAAGTCCCACAGAGGTATCTTGGTATTCAGCCCT 771
|||||||||| ||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 934 GGTCGTTCTATGGACAGAAACTCTTTCAAGTCCCACAGAGGGATCTTGGTATTCAGCCCT 993
Query 772 TTAACCAAATCATGGCGTAAAATTGCATCTATGAGATATGCTAGATCACTTCCCATTGTT 831
| | |||| |||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 994 TCGATCAAAGCATGGCGTAAAATTGCGTCTATGAGACATGCTAGATCACTTCCCATTGTT 1053
Query 832 GGTGCCACTGAAGTTACTTCAGAATTCTCGACCATACAGACCCAACATAATCGCCAACAT 891
||||||||||||||||||||||| || |||||||| |||||| |||| ||||||||| ||
Sbjct 1054 GGTGCCACTGAAGTTACTTCAGAGTTTTCGACCATGCAGACCAAACAGAATCGCCAAGAT 1113
Query 892 AGACGCTTTTACCTGTCAAGAAG-TGGCGGGGAATCAGACGTTTATGAAGACCCTCACAG 950
||||||||| |||||||||| || |||||| || ||||||||||||||||||||||||||
Sbjct 1114 AGACGCTTTCACCTGTCAAG-AGTTGGCGGAGAGTCAGACGTTTATGAAGACCCTCACAG 1172
Query 951 GCTATCGGTAAGACGACAGAACAGAAACTTGTCTGATCAAAATGGAACTAAATCTTACAG 1010
||||||||||||||||||||||||||||| | |||||||||||||||| ||||| ||||
Sbjct 1173 GCTATCGGTAAGACGACAGAACAGAAACTCGGCTGATCAAAATGGAACCAAATCCCACAG 1232
Query 1011 ATTAACAAGACAAAAGCTTGATCGGCATAACCAAAACAGCTCCAAGAGAATTGTGCTCAT 1070
||||| |||||||||||||||||||| ||||| |||||||||||||||| ||||||||||
Sbjct 1233 ATTAATAAGACAAAAGCTTGATCGGCTTAACCGAAACAGCTCCAAGAGATTTGTGCTCAT 1292
Query 1071 TGCCATAGGAGGCACTGGATTGTTCGATGAGCCACTTGATTCAGGTGAAATGTACGACTC 1130
|||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct 1293 TGCCATAGGAGGCACTGGCTTATTCGATGAGCCACTGGATTCAGGTGAAATATACGACTC 1352
Query 1131 ATCAACAAACGCATGGTCAGAAATTCAGAGACTCCCAATGGATTTCGGGGTTGTAAGTTG 1190
| |||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||
Sbjct 1353 AGCAACAAACACATGGTCAGAAATGCAGAGACTCCCGATGGGTTTTGGGGTTGTAAGTTG 1412
Query 1191 TGGGATCATATGCAATGGAATCTTCTACGCTTATTCTGAGAATGATAAGCTATCAGGGTA 1250
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1413 TGGGATTATATGCAATGGAATCTTCTATGCTTATTCTGAGAATGATAAGCTATCAGGGTA 1472
Query 1251 TGACATTGAGAGAGGCTTCTGGATTGCGATCCAAAC--C-CCAATCCCTCCTCGGGTTCA 1307
||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||
Sbjct 1473 TGACATTGAGAGAGGCTTCTGGATTACAATCCAAACATCTCCAATCCCTCCTCGGGTTCA 1532
Query 1308 TGAGTTCTACCCTAAACTCGTCTCCTGTAACCATCGGTTGTTCATGCTCTCAGTCTCATG 1367
|||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||||
Sbjct 1533 TGAGTTCTACCCTAAACTTGTCTCCTGCAACCATCGGTTGTTCATGCTCTCTGTTTCATG 1592
Query 1368 GTGCGATGAAGGAGATGGACAAATTGGGAGGAGAAACAAAGCGGTGAGAAAGCTGTGGGA 1427
|||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 1593 GTGCGATGAAGGAGATGGGCAAATTGGGAGGAGAAACAAGGCAGTGAGAAAGCTGTGGGA 1652
Query 1428 GTTGGATCTTGTGTACCTCACATGGACCGAGGTTTCAGTACACCCGGATGCACCAATGGA 1487
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1653 GTTGGATCTTGTGTACCTCACATGGACCGAGGTTTCAGTACACCCGGACGCACCAATGGA 1712
Query 1488 TTGGAACGCCACATATGTCTCAGACCAGAACATAGTAATGGGAGTTGAGATGTTCAAGAT 1547
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1713 TTGGAACGCCACATATGTCTCAGACCAGAACATACTAATGGGAATTGAGATGTTCAAGAT 1772
Query 1548 CTTTGGGCAGG 1558
|||||||||||
Sbjct 1773 CTTTGGGCAGG 1783
> AT5G42360.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:16936133-16938486 REVERSE LENGTH=2089
Length=2089
Score = 2121 bits (1148), Expect = 0.0
Identities = 1434/1571 (91%), Gaps = 23/1571 (1%)
Strand=Plus/Plus
Query 1 ATGATGATTTCTGAGATACCGCTGGGAGAGGAGTCTATCCGGCAGGATCTTGAGGTTTTA 60
|||||||||||||||| |||| ||||||| || ||||| ||||||||||| |||||||||
Sbjct 226 ATGATGATTTCTGAGAAACCGTTGGGAGAAGAATCTATACGGCAGGATCTGGAGGTTTTA 285
Query 61 ACCATGTCGAAGCGGCTTGTGAAAAGTGTTAGCCAGAAGTTGAAGAAAAAGATTCATAAA 120
||| | |||| | ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 286 ACCGTTTCGAGGAGGCTTGTGAAAAGTGTTAGCCAGAAGTTGAAGAAAAAAATTCATAAA 345
Query 121 TCTGAGGTGGTGGAAGATGAAGTGGATGCAAGGGGAGCGGTTAATTGTCTAAGCATCAGT 180
||||||||||||||||||||| || ||||||||||||||| |||||| |||||||||||
Sbjct 346 ACTGAGGTGGTGGAAGATGAAGAGGTTGCAAGGGGAGCGGTGAATTGTTTAAGCATCAGT 405
Query 181 GTTAGTTGCAGAGTTGCTGATACAGGTGAGAATTTT---GAGGATCGT-ACTGATAAGAG 236
||| ||||||||||||||||||| |||||| ||||| |||||| | | | |||||||
Sbjct 406 GTTGGTTGCAGAGTTGCTGATACGGGTGAGGATTTTGAGGAGGAT-TTAAGTAATAAGAG 464
Query 237 GTTTTCCAGTGCTAGTGAGGAGGGTAAGGGATTATTGATGACCATTTGTGGAACTGAAGA 296
| || |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 465 ATGGTCTAGTGCTAGTGAGGATGGTAAGGG---ATTGATGACCATTTGTGGAACTGAAGA 521
Query 297 AACTAGGTTGGATTGCTTTTCTTATGGGGTTAAAGAGAGGTTCTGGAAGAAGAATAATAG 356
|| |||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 522 AATTAGGTTAGATTGTTTTTCTTATGGGGTTAGAGAGAGGTTCTGGAAGAAGAATAATAG 581
Query 357 AAAATA-TTTAGTC-GACTCGGCCCAGGATTATCGGAAGCACATATT-CCTTCCCGATGA 413
|| ||| || | | ||||||| ||||||||| || |||||| | || |||||||||||
Sbjct 582 AAGATACCTT-G-CGGACTCGGGCCAGGATTACCGCAAGCACGT-TTATCTTCCCGATGA 638
Query 414 TATTCTTGAAATGTGCTTGATGAGGCTTCCTTTGACCAGCCTATTGAATGCACAGCTTGT 473
|||||| |||||||| |||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 639 TATTCTGGAAATGTGTTTGATGAGGCTTCCTTTGACCAGCTTATTGAATGCACACCTTGT 698
Query 474 TTGCAAGAAATGGCGATCCATGGCCACCAAC-CAACGGTTTCTCCAGATTAGACGAGAAG 532
|||||||||||||| ||||||||||| | || || |||||||||||||| ||||||||||
Sbjct 699 TTGCAAGAAATGGCAATCCATGGCCAAC-ACTCAGCGGTTTCTCCAGATGAGACGAGAAG 757
Query 533 GCTCCTTTCAAACCCCATGGTTCTTTCTGTTTGCTGCTCTTAAAGATGGCTGCTCCTCTG 592
||||||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 758 GCTCCTTTCAAACACCGTGGTTGTTTCTGTTTGCTGCTCTTAAAGATGGATGCTCCTCTG 817
Query 593 GTGAAATTCACGGGTATGATGTATCTCAAGAAAAATGGCATAGTATTGAATCTGATCTAC 652
|||| ||||||||||||||||| ||||| || ||||||||||| |||||| |||||||||
Sbjct 818 GTGATATTCACGGGTATGATGTTTCTCAGGACAAATGGCATAGGATTGAAACTGATCTAC 877
Query 653 TTAAAGGGCGGTATATGTACTCCGTGACGAGCATCCATGCGGAGATTTATGTAATTGGAG 712
||||||| |||| ||||||||||||||| |||||||||| |||||||||| || ||||||
Sbjct 878 TTAAAGGCCGGTTTATGTACTCCGTGACAAGCATCCATGAGGAGATTTATATAGTTGGAG 937
Query 713 GTCGTTCTACGGATAGGAACTCTTTCAAGTCCCACAGAGGTATCTTGGTATTCAGCCCTT 772
||||||||| ||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 938 GTCGTTCTATGGACAGAAACTCTTTCAAGTCCCACAGAGGGATCTTGGTATTCAGCCCTT 997
Query 773 TAACCAAATCATGGCGTAAAATTGCATCTATGAGATATGCTAGATCACTTCCCATTGTTG 832
| |||| ||||||||||||| || ||||||||| ||||||||||||||||||||||||
Sbjct 998 CGATCAAAGCATGGCGTAAAATCGCGTCTATGAGACATGCTAGATCACTTCCCATTGTTG 1057
Query 833 GTGCCACTGAAGTTACTTCAGAATTCTCGACCATACAGACCCAACATAATCGCCAACATA 892
|||||||||||||||||||||| || |||||||| |||||| |||| ||||||||| |||
Sbjct 1058 GTGCCACTGAAGTTACTTCAGAGTTTTCGACCATGCAGACCAAACAGAATCGCCAAGATA 1117
Query 893 GACGCTTTTACCTGTCAAGAAG-TGGCGGGGAATCAGACGTTTATGAAGACCCTCACAGG 951
|||||||| |||||||||| || |||||| || |||||||||||||||||||||||||||
Sbjct 1118 GACGCTTTCACCTGTCAAG-AGTTGGCGGAGAGTCAGACGTTTATGAAGACCCTCACAGG 1176
Query 952 CTATCGGTAAGACGACAGAACAGAAACTTGTCTGATCAAAATGGAACTAAATCTTACAGA 1011
|||||||||||||||||||||||||||| | |||||||||||||||| ||||| |||||
Sbjct 1177 CTATCGGTAAGACGACAGAACAGAAACTCGGCTGATCAAAATGGAACCAAATCCCACAGA 1236
Query 1012 TTAACAAGACAAAAGCTTGATCGGCATAACCAAAACAGCTCCAAGAGAATTGTGCTCATT 1071
|||| |||||||||||||||||||| ||||| |||||||||||||||| |||||||||||
Sbjct 1237 TTAATAAGACAAAAGCTTGATCGGCTTAACCGAAACAGCTCCAAGAGATTTGTGCTCATT 1296
Query 1072 GCCATAGGAGGCACTGG-ATTGTTCGATGAGCCACTTGATTCAGGTGAAATGTACGACTC 1130
||||||||||||||||| | | |||||||||||||| |||||||||||||| ||||||||
Sbjct 1297 GCCATAGGAGGCACTGGCA-TATTCGATGAGCCACTGGATTCAGGTGAAATATACGACTC 1355
Query 1131 ATCAACAAACGCATGGTCAGAAATTCAGAGACTCCCAATGGATTTCGGGGTTGTAAGTTG 1190
| |||||||| ||||||||||||| ||||||||||| |||| ||| ||||||||||||||
Sbjct 1356 AGCAACAAACACATGGTCAGAAATGCAGAGACTCCCGATGGGTTTTGGGGTTGTAAGTTG 1415
Query 1191 TGGGATCATATGCAATGGAATCTTCTACGCTTATTCTGAGAATGATAAGCTATCAGGGTA 1250
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1416 TGGGATTATATGCAATGGAATCTTCTATGCTTATTCTGAGAATGATAAGCTATCAGGGTA 1475
Query 1251 TGACATTGAGAGAGGCTTCTGGATTGCGATCCAAAC--C-CCAATCCCTCCTCGGGTTCA 1307
||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||||
Sbjct 1476 TGACATTGAGAGAGGCTTCTGGATTACAATCCAAACATCTCCAATCCCTCCTCGGGTTCA 1535
Query 1308 TGAGTTCTACCCTAAACTCGTCTCCTGTAACCATCGGTTGTTCATGCTCTCAGTCTCATG 1367
|||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||||
Sbjct 1536 TGAGTTCTACCCTAAACTTGTCTCCTGCAACCATCGGTTGTTCATGCTCTCTGTTTCATG 1595
Query 1368 GTGCGATGAAGGAGATGGACAAATTGGGAGGAGAAACAAAGCGGTGAGAAAGCTGTGGGA 1427
|||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 1596 GTGCGATGAAGGAGATGGGCAAATTGGGAGGAGAAACAAGGCAGTGAGAAAGCTGTGGGA 1655
Query 1428 GTTGGATCTTGTGTACCTCACATGGACCGAGGTTTCAGTACACCCGGATGCACCAATGGA 1487
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1656 GTTGGATCTTGTGTACCTCACATGGACCGAGGTTTCAGTACACCCGGACGCACCAATGGA 1715
Query 1488 TTGGAACGCCACATATGTCTCAGACCAGAACATAGTAATGGGAGTTGAGATGTTCAAGAT 1547
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1716 TTGGAACGCCACATATGTCTCAGACCAGAACATACTAATGGGAGTTGAGATGTTCAAGAT 1775
Query 1548 CTTTGGGCAGG 1558
||||||||||
Sbjct 1776 ATTTGGGCAGG 1786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77911245840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5