BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg356991
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70770.1 | Symbols: | Protein of unknown function DUF2359, ... 643 0.0
AT3G11880.1 | Symbols: | Protein of unknown function DUF2359, ... 425 3e-118
> AT1G70770.1 | Symbols: | Protein of unknown function DUF2359,
transmembrane | chr1:26688230-26691277 REVERSE LENGTH=2317
Length=2317
Score = 643 bits (348), Expect = 0.0
Identities = 710/877 (81%), Gaps = 56/877 (6%)
Strand=Plus/Plus
Query 165 GGTGGCACCATTTGTTGCATTAGCAATGGTATTGCGTACTAAACCTAATGTTTTGACCAC 224
||||||| ||||||||||||||| ||||||||||||| || ||| ||| |||||| |
Sbjct 896 GGTGGCAATATTTGTTGCATTAGCGATGGTATTGCGTAGGAAGCCTGATGCTTTGACTAA 955
Query 225 TCTATTGCCGA-TGCTGAGGGAGAGAAT--TATGTTTCAAGGACAGGACAAGCTTCCGGT 281
| ||||||| | | |||| || |||||| || || ||| || ||||| |||||||||||
Sbjct 956 TGTATTGCCAACT-CTGA-GG-GAGAATCCTAAGTATCAGGGTCAGGATAAGCTTCCGGT 1012
Query 282 TACAGTTTGGTTAATGGCTCAGGCCTCTGAAGGTGATTTATCTGTTGGCCTGTATTCATG 341
|||||||||| | |||||||||||||| |||||||| || |||| ||| ||||||||||
Sbjct 1013 TACAGTTTGGATGATGGCTCAGGCCTCCCAAGGTGATATAGCTGTAGGCTTGTATTCATG 1072
Query 342 GGCGCATAACTTGTTACCCCTAGTCGGTAATAACAAGTGCTACAGCCTTCAGTC-GGTGG 400
||| || ||||||||||| | ||||||||||| || || || | || |||||| | ||
Sbjct 1073 GGCTCACAACTTGTTACCTGTTGTCGGTAATAAGAACTG-TA-A-CCCTCAGTCAAG-GG 1128
Query 401 ATCTCATCCTGCAATTGGTTGAGAAAATTTTGTCGAATCCAGAGTCTAGGACCATACTTG 460
||||||||||||| |||||||||||||||||| |||||||| || || | ||||||||||
Sbjct 1129 ATCTCATCCTGCAGTTGGTTGAGAAAATTTTGACGAATCCAAAGGCTCGTACCATACTTG 1188
Query 461 TAAATGGAGCTGTTAGGGATGGA-ATTCAG-CTGATACCACCTACTTCATTTGAGATCTT 518
||||||||||||||||| | ||| | | | |||| |||||| ||||||||||||||||
Sbjct 1189 TAAATGGAGCTGTTAGGAAGGGAGA-GC-GTTTGATTCCACCTCCTTCATTTGAGATCTT 1246
Query 519 GGTACGGTTTACCTTCCCTGCTTCATCGGCGAGAGTAAAGACCACGGAGAGGTTTGAGGC 578
| | ||| |||| |||||||| ||||| || ||||||||| | || ||||||||||||||
Sbjct 1247 GTTGCGGCTTACATTCCCTGCATCATCTGCAAGAGTAAAGGCTACAGAGAGGTTTGAGGC 1306
Query 579 CATTTATCCCTTGTTGAAGGAAGTAG--C-T-CT--TGCACCA-G--G-AA-GC-A-G-- 623
|| ||||||||| |||| ||||| | | | || ||||||| | | || || | |
Sbjct 1307 AATATATCCCTTGCTGAAAGAAGTGGCTCTTGCTGGTGCACCAGGAAGCAAGGCGATGAA 1366
Query 624 ---AG---------AGATATTTGGTTTTTCGT-TGAAATTAGCTGGAGAAGGAAATCCTG 670
|| ||||||| |||| | | |||||||||||||||||||||||||||
Sbjct 1367 ACAAGTCACACAACAGATATTCACTTTTGC-TCTGAAATTAGCTGGAGAAGGAAATCCTG 1425
Query 671 TTTTAGCCAAGGAAGCTACAGAAATTGCTATCGGGTCTTTGACCGCAAATGCT--GATTG 728
||||||||||||||||||||| |||||||||| ||||| ||||| |||| || |||||
Sbjct 1426 TTTTAGCCAAGGAAGCTACAGCAATTGCTATCTGGTCTGTGACC-CAAAA-CTTTGATTG 1483
Query 729 CTTTAAGCAGTGGGACATTCTATATAAGGAGAACCTAGAAGCTAGTGTTGTTCTTCTTAA 788
|| ||||| ||||||| ||| || |||||||| || ||||||||||||| | |||||||
Sbjct 1484 CTGCAAGCACTGGGACAATCTCTACAAGGAGAATCTGGAAGCTAGTGTTGCTGTTCTTAA 1543
Query 789 AAAGCTTGTAGACGAATGGAAGGATCATTCTCTCAAACTAAT-ATCAACACC-AAGTGAT 846
||||||||| || |||||||| || ||||| |||||||| | |||| |||| || ||||
Sbjct 1544 AAAGCTTGTTGAAGAATGGAAAGAGCATTCGGTCAAACTA-TCATCATCACCGAA-TGAT 1601
Query 847 ACTCTCACCCTCAATCGGGCCATGAATAGCTTCAGGCTAAAGAACAAAAAAGCCATCACT 906
||||||| ||||| || | ||||| |||||||||||||||||| | | | |||||||
Sbjct 1602 GCTCTCACTCTCAACCGAACTATGAAAAGCTTCAGGCTAAAGAACGAGGAGGTCATCACT 1661
Query 907 AAAAGAGAAGCTCTTTG-TTCTATTTACAAAGAAGCTGACAAGTCCTGCAAAGTGATCTT 965
| ||| ||| | || |||| |||||||||||||||||||||| |||||| |||||
Sbjct 1662 GAGGGAGGAGC-CAATGCTTCTCTTTACAAAGAAGCTGACAAGTCTTGCAAAACGATCTC 1720
Query 966 GGGGAGACTCTCCTCC-GGAAGTGGCTACCTCAAAGG 1001
||||||||||||| | |||||||||| |||||||||
Sbjct 1721 GGGGAGACTCTCC-CGTGGAAGTGGCTGCCTCAAAGG 1756
> AT3G11880.1 | Symbols: | Protein of unknown function DUF2359,
transmembrane | chr3:3751660-3754060 FORWARD LENGTH=1707
Length=1707
Score = 425 bits (230), Expect = 3e-118
Identities = 697/910 (77%), Gaps = 82/910 (9%)
Strand=Plus/Plus
Query 174 ATTTGTTGCATTAGCAATGGTATTGCGTACTAAACCTAATGTTTTGACCACTCTATTGCC 233
|||||||||| |||||||||||||||||| | |||||||| |||| | | |||||||
Sbjct 442 ATTTGTTGCACTAGCAATGGTATTGCGTAATGAACCTAATACTTTGGTTATTGTATTGCC 501
Query 234 GA-TGCTGAGGGAGAGAATTATGTTTCAAGGACAGGACAAGCTTCCGGTTACAGTTTGGT 292
|| | || | ||| || | | || ||||||||| |||||||||||| || |||||||
Sbjct 502 GACT-CTCAAGGA-AG-ACGA-GTATCAAGGACATGACAAGCTTCCGATTTTAGTTTGGA 557
Query 293 TAATGGCTCAGGCCTCTGAAGGTGATTTATCTGTTGGCCTGTATTCATGGGCGCATAACT 352
| |||||||||||||| |||||||||||||||| ||| ||||||||||| || |||||
Sbjct 558 TGATGGCTCAGGCCTCCCAAGGTGATTTATCTGTAGGCTTGTATTCATGGTCGTGTAACT 617
Query 353 TGTTACCCCTA--GT--C--GGTAA----TAACAAG--T-GC-TA-CAGCCT-TCAGTCG 396
||||||| || | | | || | || || | | || || || ||||||
Sbjct 618 TGTTACCAGTATTTTACCAAGAAAACTTGTTACCAGTATCCCGTAGCA-ACTCTCAGTCA 676
Query 397 GTGGATCTCATCCTGCAATTGGTTGAGAAAATTTTGTCGAATCCAGAGT-CTAGGACCAT 455
|||||||||||||||| |||| ||||| |||||||| |||| || | || |||| ||
Sbjct 677 ATGGATCTCATCCTGCAGTTGGCTGAGATGATTTTGTCTAATCTTGA-TGCTCGGACTAT 735
Query 456 ACTTGTAAATGGAGCTGTTAGGGATGGAATTCA--G-CTGATACCACC-TACTTCATTTG 511
||||||||| ||| | |||| ||| || || | ||||| |||| || | ||||||
Sbjct 736 ACTTGTAAACGGAACCGTTATAGAT--AA-ACAGCGACTGATTTCACCTTA-TGCATTTG 791
Query 512 AGATCTTGGTACGGTTTACCTTCCCTGCTTCATCGGCGAGAGTAAAGACCACGGAGAGGT 571
|| ||||| | ||| |||| |||||||||||||| | ||||||||| | || |||||||
Sbjct 792 AGCTCTTGATGCGGCTTACATTCCCTGCTTCATCTGAAAGAGTAAAGGCTACAGAGAGGT 851
Query 572 TTGAGGCCATTTATCCCTTGTTGAAGGAAGTAGCTCTTG-C-----ACCAGGAAGC-AG- 623
||||||| ||||||||||||||||||||||| ||||||| | |||||||||| ||
Sbjct 852 TTGAGGCAATTTATCCCTTGTTGAAGGAAGTGGCTCTTGCCTGTGAACCAGGAAGCGAGT 911
Query 624 --A-G-----AG--A-T------AT-TT-GGTTTTTCGTTGA-AATTAGCTGG-AGAAGG 662
| | || | | || || || ||| |||| || ||||||| |||| |
Sbjct 912 TAATGAAACAAGTCACTCAACAAATATTCCATTATTCTTTGATAA-TAGCTGGAAGAA-G 969
Query 663 AAATCCTGTTTTAGCCAAGGAAGCTACAGAAATTGCTATCGGGTCTTTGACCGCAAATGC 722
||||| ||||||||||||||||||||||| ||| ||| || ||||| |||||| ||| |
Sbjct 970 AAATCTTGTTTTAGCCAAGGAAGCTACAGCAATCGCTGTCTGGTCTCTGACCGAAAACG- 1028
Query 723 T-GATTGCTTTAAGCAGTGGGACATTCTATATAAGGAGAACCTAGAAGCTAGTGTTGTTC 781
| ||||||| ||||||||||| | || ||| |||||| |||||||||||||| |
Sbjct 1029 TAGATTGCTGCAAGCAGTGGGAAAAACTCTATTGGGAGAATAAAGAAGCTAGTGTTGCTG 1088
Query 782 TTCTTAAAAAGCTTGTAGACGAATGGAAG-GATCA-TTCTC-TCAAACTAATATCAACAC 838
||||||||||||||||||| ||| || | ||| | ||| | |||||||| |||| |||
Sbjct 1089 TTCTTAAAAAGCTTGTAGATGAAAGG-GGTGAT-ATTTC-CATCAAACTAGCATCATCAC 1145
Query 839 CAAGTGAT-ACTCTCACCCTCAATCGGGCCATGAATAGCTTCAGGCTAAAGAACAAAAAA 897
| ||| || | | |||| ||||||| | ||| | ||| |||||||||| ||| |||||
Sbjct 1146 CGAGTCATAAAT-TCACACTCAATCAAACTATGGAGAGCATCAGGCTAAAAAACGAAAAA 1204
Query 898 GCCATCACTAAAAGA-GAAGCTC-TTTGTTCTATTTACAAAGAAGCTGACAAGTCCTGCA 955
||||||||| || || ||| | | || ||||| ||||||||||||||||||||||||||
Sbjct 1205 GCCATCACTGAAGGAGGAA-C-CATTGGTTCTCGTTACAAAGAAGCTGACAAGTCCTGCA 1262
Query 956 AAGTGATCTTGGGGAGACTCTCCTCCGGAAG-TGGCTACCTCAAAGGTATAACAGCTGTT 1014
||||||| | ||| ||| ||| | || ||| || || ||||||||||| |||| ||
Sbjct 1263 AAGTGATGTCGGGTAGATTCTTC-CCTGAAAATGCCTGCCTCAAAGGTA---CAGCCATT 1318
Query 1015 ACTACTGCTG 1024
| ||||||||
Sbjct 1319 ATTACTGCTG 1328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54266789145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5