BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357025
Length=642
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48220.1 | Symbols: | Aldolase-type TIM barrel family prote... 845 0.0
> AT5G48220.1 | Symbols: | Aldolase-type TIM barrel family protein
| chr5:19549798-19552267 FORWARD LENGTH=1493
Length=1493
Score = 845 bits (457), Expect = 0.0
Identities = 574/627 (92%), Gaps = 22/627 (4%)
Strand=Plus/Plus
Query 7 GCAATGCGTTCTCTTCAGCACTTTCCC-TCCTCCGCCATTCAACGACGGCTCTCTCAGTT 65
||| ||| ||||||||||| | ||||| |||||||||| ||||||||| ||||||| |||
Sbjct 142 GCACTGCTTTCTCTTCAGC-CCTTCCCTTCCTCCGCCACTCAACGACGTCTCTCTCCGTT 200
Query 66 TAACATCCACGATAAACTTACCAGACCCTCTTCTTGT-CTTCCTCTTCGTGCTCAAAAGT 124
|||| ||||| ||| |||||||||||| ||||||| | | ||||||||||||||||||||
Sbjct 201 TAACCTCCACAATACACTTACCAGACCTTCTTCTTATGC-TCCTCTTCGTGCTCAAAAGT 259
Query 125 CTGGAATCACTGAAGGTTCCTCTGATTCGGCATTGGAGGGTAAAGTAAGTGATCTCAAGA 184
|||||||||| ||||| | |||||||| ||| | | || || | || |||
Sbjct 260 CTGGAATCACAGAAGG-T--TCTGATTCAGCA-T------T--AG--AG-G--CTAAAG- 301
Query 185 TTAGTGAGCAAGAAGTGGGGATGTACCAGAATGAAGTAGTTGAGAGTCAGGGTATTAGGA 244
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 302 TAAGTGAGCAAGAAGTGGGAATGTACCAGAATGAAGTAGTTGAGAGTCAAGGTATAAGGA 361
Query 245 TAAGGAGAAGACCACCTACTGGACCTCCATTGCATTACGTTGGACCTTTTGAGTTCCGCC 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 362 TAAGGAGAAGACCACCTACTGGACCTCCATTGCATTACGTTGGACCTTTTGAGTTCCGGC 421
Query 305 TCCAGAACGAGGGTAACACGCCTCGTAATATCTTGGAAGAGATCGTATGGCACAAGGATA 364
| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 422 TTCAGAACGAGGGAAACACGCCTCGTAACATCTTGGAAGAGATCGTATGGCACAAGGATA 481
Query 365 AAGAAGTTGCTCAGATGAAAGAGAGGAAGCCTCTTTATACCTTGAAGAAGGCTCTTGATA 424
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 482 AAGAAGTTGCTCAGATGAAAGAGAGAAAGCCTCTTTATAGCTTGAAGAAGGCTCTTGATA 541
Query 425 ATGTTCCTCCTGCTAAAGACTTCATTGGTGCTCTTAGATCGGCTCATCAAAGAACGGGGT 484
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 542 ATGTTCCTCCTGCTAAAGACTTCATTGGTGCTCTTAGATCGGCTCACCAAAGAACGGGGT 601
Query 485 TACCTGGTTTAATAGCTGAGGTTAAGAAAGCTTCTCCAAGCAGAGGCATCCTTAGAGAGG 544
| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 602 TGCCTGGTTTAATAGCTGAGGTTAAGAAAGCTTCTCCAAGTAGAGGAATCCTGAGAGAGG 661
Query 545 ATTTTAACCCTGTTGAAATTGCACAAGCTTATGAGAAGGGTGGAGCAGCATGTCTTAGTG 604
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 662 ATTTTAACCCTGTTGAAATTGCACAAGCTTATGAGAAGGGGGGAGCAGCATGTCTTAGTG 721
Query 605 TTTTGACAGATGACAAATACTTCCAGG 631
||||||||||||||||||||||| |||
Sbjct 722 TTTTGACAGATGACAAATACTTCAAGG 748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30994468699
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5