BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357028
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48250.1 | Symbols: | B-box type zinc finger protein with C... 905 0.0
> AT5G48250.1 | Symbols: | B-box type zinc finger protein with
CCT domain | chr5:19561319-19563722 REVERSE LENGTH=1704
Length=1704
Score = 905 bits (490), Expect = 0.0
Identities = 577/616 (94%), Gaps = 17/616 (3%)
Strand=Plus/Plus
Query 178 GAGCTTGGAGTATGCGAGGATGACTTTAATGGAAATCTCATTACAGATGAAGTAGACTTG 237
|||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 705 GAGCTTGGAGTATGTGAGGATGACTTCAATGGAAATCTCATTTCAGATGAAGTAGACTTG 764
Query 238 GCTCTTGAGAACTATGAAGAACTCTTTGGTTCAGCCTTCAACTCATCAAGATATCTCTTC 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 GCTCTTGAGAACTATGAAGAACTCTTTGGTTCAGCCTTCAACTCATCAAGATATCTCTTC 824
Query 298 GAACACGGAGGAATTGGAAGTCTTTTCGAGAAAGATGAAGCTCCTGAGGGCTCAAACAAA 357
|| ||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 825 GAGCACGGTGGAATTGGAAGTCTTTTCGAGAAAGATGAAGCTCATGAGGGCT-------- 876
Query 358 GGAAACGAAATGCAGCAGCCTGCCGTAAACAATAATGCATCTGCAGATTCGTTCATGACT 417
| |||||||||||| || ||| |||||||||||||||||||||||||||||||
Sbjct 877 -----C--AATGCAGCAGCCAGCATTAAGCAATAATGCATCTGCAGATTCGTTCATGACT 929
Query 418 TGTAGAACGGAGCCAATAATTTGCTATTCATCAAAGCCTA-CTCATTCGAATATATCCTT 476
|||||||| ||||||||||||||||||||||||||||| | | ||||||||||| |||||
Sbjct 930 TGTAGAACCGAGCCAATAATTTGCTATTCATCAAAGCC-AGCACATTCGAATATCTCCTT 988
Query 477 CTCTGGCATCACGGGAGAAAGTAATGCTGGAGATTTCCAAGATTGTGGGGCATCATCGAT 536
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 989 CTCTGGCATCACTGGAGAAAGTAATGCTGGAGATTTCCAAGATTGTGGGGCGTCATCGAT 1048
Query 537 GAAGCAGCTTTTAAGGGAGCCACAACCATGGTGCCATCCAACAGCACAGGACATTATTGC 596
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 GAAGCAGCTTTCAAGGGAGCCACAACCATGGTGCCATCCAACAGCACAGGACATTATTGC 1108
Query 597 TTCCTCACATGCCACAACACGTAACAATGCTGTTATGCGCTACAAGGAAAAGAAGAAGGC 656
|||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 1109 TTCCTCACATGCAACAACACGTAATAACGCTGTTATGCGTTACAAGGAAAAGAAGAAGGC 1168
Query 657 TCGCAAGTTTGACAAGCGAGTGAGGTATGTCTCTAGGAAAGAAAGGGCTGATGTGAGACG 716
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1169 TCGCAAGTTTGACAAGCGAGTAAGGTATGTCTCTAGGAAAGAAAGGGCTGATGTGAGACG 1228
Query 717 GCGTGTGAAAGGACGGTTTGTCAAGTCCGGTGAAGCTTATGATTACGACCCAATGAGCCC 776
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1229 GCGTGTGAAAGGACGGTTTGTCAAGTCCGGTGAAGCTTATGATTACGACCCGATGAGCCC 1288
Query 777 AACAAGAAGCTACTGA 792
||||||||||||||||
Sbjct 1289 AACAAGAAGCTACTGA 1304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38529590749
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5