BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357041
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48380.1 | Symbols: BIR1 | BAK1-interacting receptor-like ki... 695 0.0
> AT5G48380.1 | Symbols: BIR1 | BAK1-interacting receptor-like
kinase 1 | chr5:19604089-19607059 REVERSE LENGTH=2756
Length=2756
Score = 695 bits (376), Expect = 0.0
Identities = 609/716 (85%), Gaps = 37/716 (5%)
Strand=Plus/Plus
Query 91 AATTGTCTCTGTTTGCTGCTACTGT-GTACCTTGATCGATGCAAATCAGGCCAACGTAGA 149
||||||||||||||||||||||| | | | |||| | || || ||||||||||| ||||
Sbjct 438 AATTGTCTCTGTTTGCTGCTACTCTCG-AGCTTGGTTGACGCGGATCAGGCCAACATAGA 496
Query 150 TTGCTTGAGGACCTTTAAATCTCAAGTAGAGGATCCAAATAGCTATTTATCGAGTTGGGT 209
|||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 497 TTGCTTAAGGACCTTTAAATCTCAAGTAGAGGATCCAAATAGATATTTATCGACTTGGGT 556
Query 210 TTTTGGCAACGAGGCTTATGGTTATATCTGTAAGTTTAGTGGTGTGACTTGTTGGCATGA 269
||||||||||||| || |||||||||||| ||||| |||||||||||||||||||||||
Sbjct 557 TTTTGGCAACGAGACTGCTGGTTATATCTGCAAGTTCAGTGGTGTGACTTGTTGGCATGA 616
Query 270 TGATGAGAATAGGGTTTTGAGTATTAAGCTCTCTGGTTATGGTCTTAGAGGAGTGTTTCC 329
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 617 TGATGAGAATAGGGTTTTGAGTATTAAGCTATCTGGTTATGGTCTTAGAGGAGTGTTTCC 676
Query 330 TCTTG-GGATTAAGCAATGTTCTGATTTGG-TAGGTTTAGATATTTCTAGAAACAACTTC 387
|| || || |||||| |||| ||||| | | ||||||||| |||||||||||||||||
Sbjct 677 TCCTGCGG-TTAAGCTATGTGCTGATCTCACT-GGTTTAGATCTTTCTAGAAACAACTTC 734
Query 388 TCTGGACCTTTACCATCGAACCTTA-CAGATGTGATTCCACTTGTTACAACTT-TGGACC 445
||||||||||||||| | ||| ||| || | |||||||||||||||| | || | ||||
Sbjct 735 TCTGGACCTTTACCAGCCAACATTAGCACCT-TGATTCCACTTGTTACGA-TTCTAGACC 792
Query 446 TCTCCTTCAATAGTTTCACTGGTGGAATCCCT--GTCAATATCGCAAACATTACCTTTTT 503
|||||| |||||| ||| |||||| ||||||| || || || ||| ||||||||||||
Sbjct 793 TCTCCTACAATAGCTTCTCTGGTGAAATCCCTATGTTGATCTC-CAA-CATTACCTTTTT 850
Query 504 GAACTCTCTTATGCTTCAGAATAACCGGTTCACTGGT-CAGCTACCTCCCGAGCTAGTGA 562
|||| |||||||||||||| |||||| |||||| ||| | || |||||| |||||| |
Sbjct 851 GAACACTCTTATGCTTCAGCATAACCAGTTCACGGGTACT-CTTCCTCCCCAGCTAGCGC 909
Query 563 AACTTGGACGGCTCAAAACGTTCTCTGTGGCTAACAATCGTCTC-TCAGGTCCTATCCCA 621
||||||||||||||||||| ||||||||| || ||||||||||| | ||||||||||||
Sbjct 910 AACTTGGACGGCTCAAAACATTCTCTGTGTCTGACAATCGTCTCGTT-GGTCCTATCCCA 968
Query 622 ACGTTCAA--AAGCACCA-GCA-TT-AACTCAGAGAATT-TT-GCTAATAACACGGGTT- 673
| ||||| || ||| ||| || || ||| ||||| || ||||||||| | || |
Sbjct 969 AATTTCAACCAA--ACCTTGCAGTTTAAG-CAG-GAATTGTTTGCTAATAAC-CTGGATC 1023
Query 674 TGTGTGGTAAGCCTCTGGATGAATGTAAGACTGCTTCTAGA----G-G-TAAAGTTGTTA 727
|||||||||||||||| ||||| ||||||| ||||||||| | | |||||||||||
Sbjct 1024 TGTGTGGTAAGCCTCTAGATGACTGTAAGAGTGCTTCTAGCTCTCGTGGTAAAGTTGTTA 1083
Query 728 TTATAGCGGCACTAGGTGGATTTACTGTGGCAGCATTTGTCGTTGGGATTATTTTG 783
||||||||||| | |||||| | |||| |||||||| ||||||||| || |||||
Sbjct 1084 TTATAGCGGCAGTTGGTGGACTGACTGCAGCAGCATTAGTCGTTGGGGTTGTTTTG 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40790127364
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5