BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357044
Length=2526
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48410.1 | Symbols: ATGLR1.3, GLR1.3 | glutamate receptor 1.... 1869 0.0
AT5G48400.2 | Symbols: ATGLR1.2, GLR1.2 | Glutamate receptor fa... 1831 0.0
AT3G07520.1 | Symbols: ATGLR1.4, GLR1.4 | glutamate receptor 1.... 307 3e-82
> AT5G48410.1 | Symbols: ATGLR1.3, GLR1.3 | glutamate receptor
1.3 | chr5:19620267-19623425 FORWARD LENGTH=2780
Length=2780
Score = 1869 bits (1012), Expect = 0.0
Identities = 1456/1666 (87%), Gaps = 48/1666 (3%)
Strand=Plus/Plus
Query 8 AGAGATTTTGTATTCAAAACTC-ACCTCTGCTATCATTTCTTCTTGTTCTGCTTCTCTTC 66
||||||||||||||| |||| | | || ||||||| |||||||||||| |||||||||||
Sbjct 54 AGAGATTTTGTATTC-AAACCCAAACTTTGCTATCGTTTCTTCTTGTTTTGCTTCTCTTC 112
Query 67 ATCTCCAACTGTTTTGCTTCAAGTCAAAATGATGAAGTTGAT----G--AACAAGTTCGG 120
||||||| | ||||||||| | | |||| || || |||||| | ||| |||| |
Sbjct 113 ATCTCCAGGTCTTTTGCTTCTACTAAAAACGACGACGTTGATGGAGGTAAACGGGTTCAG 172
Query 121 GTCAGGGTAGGGTTGGTTTTGGATTTGGGTTCCGTGGAAGGGAAGATAGTGAGAAGCTCT 180
|| |||| |||||||||||||||||||||||| || ||||||||||||||| || ||||
Sbjct 173 ATCCGGGTCGGGTTGGTTTTGGATTTGGGTTCCTTGAAAGGGAAGATAGTGAAAAACTCT 232
Query 181 GTTTCTATGGCGCTTTCCGATTTCTACGCCATTCATAATGATTACAAAACAAGAGtctct 240
||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 233 GTTTCCATGGCTCTTTCCTATTTCTACGCTATTCATAATGATTACAAAACAAGAGTCTCT 292
Query 241 ctctcagtcagaaactctcatggagagcctcttcttactctct-cttctGCTGTAGATCT 299
| ||| ||||||||||||||||||||||||||||| |||| | ||||||||||||||||
Sbjct 293 GTTTCACTCAGAAACTCTCATGGAGAGCCTCTTCTTGCTCT-TGCTTCTGCTGTAGATCT 351
Query 300 AT-TGCAAACTGAAGGAGTAGAAGCGATTATTGGCGGGAATTCGTTGTTGGAAGCAAAGC 358
| || |||||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 352 -TCTGAAAACTGAAGGAGTAGAAGCGATTATTGGCGGGAACTCGTTGTTAGAAGCGAAGC 410
Query 359 TTTTAGGGGAACTTGGAGAGAAAGCTAGGGTTCCTATGATTTCACTTGACTCTCC-TATT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 411 TTTTAGGGGAACTTGGAGAGAAAGCTAGGGTTCCTATGATTTCACTTGACTCTCCGT-TT 469
Query 418 TCAT-GTTCATTGAGTAAATACAGTCACTTGATCCAAGCCACACATGATTCCACCTCAGA 476
|||| || |||| || ||||||| ||||||||||||||||||||||||||| ||||| ||
Sbjct 470 TCATTGT-CATTAAGCAAATACACTCACTTGATCCAAGCCACACATGATTCTACCTCTGA 528
Query 477 GGCTAAGGGGATTACATCTTTTATTAATGGGTTTGATTGGAACAGTGTTGCTCTTGTTTA 536
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 529 GGCAAAGGGGATTACATCTTTTATTAATGTGTTTGATTGGAACAGTGTTGCTCTTGTTTA 588
Query 537 TGAAGATCATGATGATTGGAAAGACTCTATGCAACTTCTTG-TGGACCATTTCCATGAGA 595
||||||||||||||| |||| ||| |||||||||| ||| |||| ||||| |||||||
Sbjct 589 TGAAGATCATGATGACTGGAGAGAGAGTATGCAACTT-TTGGTGGAGCATTTTCATGAGA 647
Query 596 ACAATGTTCGTGTAAAGTCCAAGATTGGTTTTACTGTCTCTTCGAGTGAGGATTCTATGA 655
|| |||||||||| |||||||| ||||||||||||||||||| |||||||||| | |||
Sbjct 648 ACGGTGTTCGTGTACAGTCCAAGGTTGGTTTTACTGTCTCTTCTAGTGAGGATTTTGTGA 707
Query 656 TGGATCGGTTACGGAAGCTTAACGCCTTGGGAACAACTGTCTTTGTTGTTCACTTGTC-G 714
||| |||||||| | |||| || | |||||| || ||||||||||||||||||||||| |
Sbjct 708 TGGGTCGGTTACAGCAGCTGAAGGACTTGGGGACTACTGTCTTTGTTGTTCACTTGTCTG 767
Query 715 AAAGTTATGGCAACTTATCTCTTCCCATGTGCT-GAGAAATTAGGGATGATGGGTGAAGG 773
|| ||||| |||||| || | |||||||||||| | || ||||||| |||||||||| ||
Sbjct 768 AA-GTTATTGCAACTCATTTATTCCCATGTGCTCG-GAGATTAGGGTTGATGGGTGATGG 825
Query 774 TTTTGCTTGGATTCTCACTGCCAAAAGC-ATGAACAGTTTTCATGAGTCCATTGATGATT 832
|||| |||||| || ||||| |||| | |||||||| || |||||| |||||||||||
Sbjct 826 GTTTGTTTGGATCCTGACTGCTAAAA-CTATGAACAGCTTCCATGAGAACATTGATGATT 884
Query 833 TCGCAAAGGAGACAATGGAAGGTGTGGTTGGTTTCAAATCTTACATTCCAATGTCAAAAG 892
|| ||||| || ||||||||||||||||||||||||| ||||||||||||||||| | ||
Sbjct 885 TCACAAAGCAGGCAATGGAAGGTGTGGTTGGTTTCAAGTCTTACATTCCAATGTCTATAG 944
Query 893 AGGTTCACAATTTCACTTTGAGGTGGAGAAAATCACTGCATGTTGAAGAAGTTATTGG-G 951
|| |||| |||||||||||||| |||||||||||| ||| ||||||||||| || |
Sbjct 945 AGCTTCAAAATTTCACTTTGAGATGGAGAAAATCATTGCCTGTTGAAGAAGC----GGAG 1000
Query 952 ACTGAGATTACTCGGTTGAGCATCTCTGGTATTTGGGCTCACGATATCGCTTGGGCTCTG 1011
|| | | |||||||||| |||||||| || ||||||||||||||||||| ||||||
Sbjct 1001 -CT-A-A---CTCGGTTGAGTATCTCTGGCATATGGGCTCACGATATCGCTTTTGCTCTG 1054
Query 1012 GCGAGTGCAGCGGAAGTTATAAGGATGCCAAATGTAACATCAACTCTCCTTGAGGCAATC 1071
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1055 GCGAGAGCAGCAGAAGTTATAAGGATGCCAAATGTGACATCAACTCTCCTTGAGGAAATC 1114
Query 1072 ACAGAGAGTAAATTTATA-GGTTTGAGTGGTGACTTCCAATTAGATGATAGGAAGTTGTT 1130
||| ||| || |||| | |||||||||||||| |||||| || |||||| |||||||||
Sbjct 1115 ACAAAGACTAGGTTTA-ACGGTTTGAGTGGTGATTTCCAACTAAATGATAAGAAGTTGTT 1173
Query 1131 ATCAGACAAGTTTGAGATTGTGAATATGATAGGATCAGGTGAGAGAAG-GATAGGATTCT 1189
|||| |||||||||||||| | ||||||||||||||| |||||||||| | |||||||||
Sbjct 1174 ATCAAACAAGTTTGAGATTATCAATATGATAGGATCAAGTGAGAGAAGAG-TAGGATTCT 1232
Query 1190 GGAATTTTAATGGTAGTTTTAGCAATAGAAGACATTTATCATCTACTCATAACAATCTTG 1249
||| | ||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 1233 TGAACTCTAACGGTAGTTTTAGTAATAGAAGACATTTATCTTCTACTCATAACAAGCTTG 1292
Query 1250 AGACCATAATCTGGCCTGGTGGCTCTACTCAAAGTCCAAAAGGGAGTAGTCTAAAACAGA 1309
|||||||||||||||| ||||| ||| |||||||||| ||||||| |||||||| | | |
Sbjct 1293 AGACCATAATCTGGCCAGGTGGGTCTGCTCAAAGTCCGAAAGGGACTAGTCTAATAGATA 1352
Query 1310 GCGATAGAAAAAAGCTGAGGGTTTTGGTTACGTCTAGCAATAGATTCCCAAGACTGGTGA 1369
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||
Sbjct 1353 GCGATAGAAAAAAGCTGAGGGTCTTGGTTACATCTAGCAATAGATTCCCAAGACTGATGA 1412
Query 1370 ATGTA-ACAACTGACCCAGTAACACATGATATAATAAATGTCGATGGGTTCTGTATAGAA 1428
| || | | |||| ||||||||| |||| || ||| ||| || |||||||||||||||
Sbjct 1413 AAGTGGAGA-CTGATCCAGTAACAAATGA-AT--TAATTGTTGAAGGGTTCTGTATAGAA 1468
Query 1429 GTCTTTAATGCTTCCATT-GCACCTTTTAACTATGAAGTGGAGTACATACGTTGGCGCAA 1487
|||||| ||||| ||| | ||||| ||||||||||| ||||| |||| ||||| |||
Sbjct 1469 GTCTTTCGCGCTTCGATTAGT-CCTTTCAACTATGAAGTTGAGTATATACCTTGGCTCAA 1527
Query 1488 CGGAAGTAACTACGACAATCTTGCATATGTACTTAATAGCCAGAAAGACAAATATGATGC 1547
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1528 TGGAAGTAACTACGACAATCTTGCATATGCACTTCATAGCCAGAAAGACAAATATGATGC 1587
Query 1548 GGCCGTGGGAGATATTACTATCACTTGGAATAGATCGACATACGTTGA-TTTCACGTTGC 1606
|||||||||||||||||| ||||||| |||||||||||| || ||||| ||| |||||||
Sbjct 1588 GGCCGTGGGAGATATTACAATCACTTCGAATAGATCGACGTATGTTGACTTT-ACGTTGC 1646
Query 1607 CATTCACCGAAATGGGTCTTGGAATCGTAGCACTCAAGGAGAGAAG 1652
||||||| ||||||||||||||||| |||||| | || ||||||||
Sbjct 1647 CATTCACTGAAATGGGTCTTGGAATTGTAGCAGTAAAAGAGAGAAG 1692
Score = 791 bits (428), Expect = 0.0
Identities = 737/884 (83%), Gaps = 30/884 (3%)
Strand=Plus/Plus
Query 1655 TTATAGTTTGGTTGATAGAAAGA-CATGAGAACCCTGAGTTCCAGGGATCTTGGTCC-CA 1712
||||||||||||||||||||||| | ||||||| |||||||| ||||||||| || ||
Sbjct 1767 TTATAGTTTGGTTGATAGAAAGAGC-TGAGAACAAAGAGTTCCAAGGATCTTGG-CCACA 1824
Query 1713 ACAGATTGGAGTTATGCTTTGGTTTGGGTTCTCTACCCTTGTTTATGCTCATAGGGAGAG 1772
||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct 1825 ACAGATTGGAGTTGTGCTTTGGTTTGGCTTCTCTACCCTTGTCTATGCTCATAGGGAAAA 1884
Query 1773 GCTAAACCACAACTTATCAAGATTTGTAGTTACAGTTTGGATATTTGCGGTGCTCATACT 1832
|||||| |||||||||||||||||||| |||||||||||| ||||||| |||||||||||
Sbjct 1885 GCTAAAACACAACTTATCAAGATTTGTTGTTACAGTTTGGGTATTTGCAGTGCTCATACT 1944
Query 1833 G-GTAACAAGTTACACTGCAACATTGACATCAATGATGACGGTGCAATC-GATACGATTC 1890
| | ||||||||||||||||||||||||||||||||||||| ||| | |||||||||
Sbjct 1945 GACT-GCAAGTTACACTGCAACATTGACATCAATGATGACGGTACAA-CAGATACGATTT 2002
Query 1891 AACTCTAATAAAAACTATGTGGGTCACCTCTCCGGTTCCCTCATCGCAAAAGCGGCCCTC 1950
||||| || || |||| ||||||||||| ||||| |||||||| ||||| | ||| |||
Sbjct 2003 AACTCCAACGAAGACTACGTGGGTCACCTTTCCGGCTCCCTCATTGCAAATGTGGCTCTC 2062
Query 1951 ACCAATTCCAGCATGCAAACAATGAGATCACTGGGTCTCAATACTTCAG-ACGATTATGC 2009
|| | ||||||| | | | ||||||||||| ||||||| |||| | | | | ||||||||
Sbjct 2063 ACTAGTTCCAGCCTCCGAGCAATGAGATCATTGGGTCTTAATAGTGCTGCA-GATTATGC 2121
Query 2010 TCGAGCCTTGTTGGACAAAAATGTCTCACTTATTGTT-AGTGAGTTGCCATACCTCAAAG 2068
|| |||||||||| |||| | ||| ||| || ||||| | ||||||||||||||||||||
Sbjct 2122 TCAAGCCTTGTTGAACAAGACTGTTTCATTTGTTGTTGA-TGAGTTGCCATACCTCAAAG 2180
Query 2069 TCCTTTTTCGCGATTACCCTAA-AGATTTTCTCATGGTCAAGAAACAATATACAACCAAT 2127
| | || |||| | || || | ||||| |||||||||||| ||||| ||| |||||
Sbjct 2181 TTGTCCTTGGCGAGAATCC-AACACATTTTTTCATGGTCAAGACACAATCTACCACCAAC 2239
Query 2128 GGTTTTGGCTTTATGTTCCAGAAGGGCTCCGAGTTGGTGCATAATGTTTCTCGGGAGATC 2187
||||| ||||||||||| || ||||||| ||||||||||| |||||| || || || |||
Sbjct 2240 GGTTTCGGCTTTATGTTTCAAAAGGGCTTCGAGTTGGTGCCTAATGTGTCCCGAGAAATC 2299
Query 2188 TCGCAGCTAAGGACGAGCGAGA-GACTAAACGAGATGGAGAGAAGATGGTTTGAAAAACA 2246
|| |||||||||||||||||| | ||||| |||||||||| |||||||||||| || ||
Sbjct 2300 TCAAAGCTAAGGACGAGCGAGAAG-CTAAATGAGATGGAGAAAAGATGGTTTGATAATCA 2358
Query 2247 GTCCTC-ATACCCAACGGATGATACATCAAATCCTCTAACCCTTGATAGATTCCGCGGTC 2305
| || |||| |||| |||||||||||||||||| | || ||| | ||||||||||||
Sbjct 2359 A-CTTCCATACACAACCGATGATACATCAAATCCTATTACTCTTTACAGATTCCGCGGTT 2417
Query 2306 TGTTTATGATCA-CTGGAGTTTCATTCGCTTTCTCTCTTGCAGTACTTTTCATCCTCTGG 2364
||||||| |||| | || ||||||||||||||| ||||||| |||||| |||| |||||
Sbjct 2418 TGTTTATAATCATC-GGTGTTTCATTCGCTTTCGCTCTTGCGGTACTTGTCATTCTCTGT 2476
Query 2365 CTCCGAGAAAAATGGGATATTCTTGTGAATTCGGTCAATATATTCCTCTCACGACGACTA 2424
||||| || |||||||| ||||||||| | | || || | |||||||| ||||||
Sbjct 2477 CTCCGCGACAAATGGGAAATTCTTGTGGA--CAATC--TAGA--CCTCTCACAACGACTT 2530
Query 2425 AGACATTTCAGGATC-ATCTTCACAAGAACTATCCATCCTAGTCCCCTCGATAACACTAT 2483
||||||||||||||| | ||| |||| |||| ||| |||||||||| ||| || | ||
Sbjct 2531 AGACATTTCAGGATCCA-CTTTGTAAGATCTATACATACTAGTCCCCTTGATGACCCCAT 2589
Query 2484 TGGCGAGAA-TGCTATTCAAATGGCTCAACGTAACAGACGATAG 2526
|||||| || ||| ||||||||||||||| || |||| ||||
Sbjct 2590 TGGCGA-AACTGCGGTTCAAATGGCTCAACAAAATAGACAATAG 2632
> AT5G48400.2 | Symbols: ATGLR1.2, GLR1.2 | Glutamate receptor
family protein | chr5:19616244-19619246 FORWARD LENGTH=2604
Length=2604
Score = 1831 bits (991), Expect = 0.0
Identities = 1443/1661 (87%), Gaps = 31/1661 (2%)
Strand=Plus/Plus
Query 9 GAGATTTTGTATTCAAAACTCACCTCTGCTATCATTTCTTCTTGTTCTGCTTCTCTTCAT 68
|||| |||||||||||| | || | ||||||| |||||||||||||||||| |||||||
Sbjct 6 GAGAATTTGTATTCAAACCCCAATTTTGCTATCGTTTCTTCTTGTTCTGCTTTTCTTCAT 65
Query 69 CTCCAACTGTTTTGCTTCAAGTCAAAATGATGAAGTTGATGAACAAG-TTCGGGTCAGGG 127
|||||||||||||||||| |||||||| | || | |||| ||| | |||||||| |||
Sbjct 66 CTCCAACTGTTTTGCTTCGAGTCAAAACAACGATGATGATAAAC-GGATTCGGGTCCGGG 124
Query 128 TAGGGTTGGTTTTGGATTTGGGTTCCGTGGAAGGGAAGATAGTGAGAAGCTCTGTTTCTA 187
| |||||||||||||||||||||||||||||||||||||||||| | || |||||||| |
Sbjct 125 TCGGGTTGGTTTTGGATTTGGGTTCCGTGGAAGGGAAGATAGTGCGGAGTTCTGTTTCCA 184
Query 188 TGGCGCTTTCCGATTTCTACGCCATTCATAATGATTACAAAACAAGAGtctctctctcag 247
|||| ||||| |||||||||| || ||| ||||| |||||||||||| ||||||| | ||
Sbjct 185 TGGCTCTTTCTGATTTCTACGACAATCACAATGACTACAAAACAAGACTCTCTCTTTTAG 244
Query 248 tcagaaactctcatggagagcctcttcttactctct-cttctGCTGTAGATCTATTGCAA 306
||||| | ||||||||||||||||||||| |||| | ||| | ||||||| | |||||
Sbjct 245 TCAGAGATTCTCATGGAGAGCCTCTTCTTGCTCT-TGATTCAGTTGTAGATTTGCTGCAA 303
Query 307 ACTGAAGGAGTAG-AAGCGATTATTGGCGGGAATTCGTTGTTGGAAGCAAAGCTTTTAGG 365
|| |||||||| | |||| || ||||||||||| |||||| | ||||| |||||||| ||
Sbjct 304 ACAGAAGGAGT-GCAAGCAATAATTGGCGGGAACTCGTTGCTAGAAGCGAAGCTTTT-GG 361
Query 366 -GGAACTTGGAGAGAAAGCTAGGGTTCCTATGATTTCACTTGACTCTCCTATTTCA-TGT 423
|||||||||||||||||||||||||||| ||||||||||| ||||||| || ||| ||
Sbjct 362 CGGAACTTGGAGAGAAAGCTAGGGTTCCTGTGATTTCACTTAACTCTCCCATGTCATTG- 420
Query 424 TCATTGAGTAAATACAGTCACTTGATCCAAGCCACACATGATTCCACCTCAGAGGCTAAG 483
|||||||| ||||||| |||||||||||||||||||||| | || |||| |||| |||
Sbjct 421 TCATTGAGCAAATACACTCACTTGATCCAAGCCACACATAACTCTGCCTCTGAGGTTAAA 480
Query 484 GGGATTACATCTTTTATTAATGGGTTTGATTGGAACAGTGTTGCTCTTG-TTTATGAAGA 542
|| |||||| |||| | |||||||||||||||||||||||||||||| |||| |||||
Sbjct 481 GGAATTACAGCTTTCCTCCATGGGTTTGATTGGAACAGTGTTGCTCTTGTTTTA-GAAGA 539
Query 543 TCATGATGATTGGAAAGACTCTATGCAACTTCTTGTGGACCATTTCCATGAGAACAATGT 602
||| ||||| |||| ||| |||||| || | ||||||||||||||||||||||| ||
Sbjct 540 TCACGATGACTGGAGAGAGAGTATGCATTTTATGGTGGACCATTTCCATGAGAACAACGT 599
Query 603 TCGTGTAAAGTCCAAGATTGGTTTTACTGTCTCTTCGAGTGAGGATTCTATGATGGATCG 662
|| |||| |||||||| ||| ||||| |||| ||||||||||||||||| ||||||||||
Sbjct 600 TCATGTACAGTCCAAGGTTGCTTTTAGTGTCACTTCGAGTGAGGATTCTTTGATGGATCG 659
Query 663 GTTACGGAAGCTTAACGCCTTGGGAACAACTGTCTTTGTTGTTCACTTGTC-GAAAGTTA 721
|||||| ||||||| | ||||||||||||||||||||||||||||||||| | ||||||
Sbjct 660 ATTACGGGAGCTTAAGGACTTGGGAACAACTGTCTTTGTTGTTCACTTGTCTG-AAGTTA 718
Query 722 TGGCAACTTATCTCTTCCCATGTGCTGAGAAATTAGGGATGATGGGTGAAGGTTTTGCTT 781
| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 719 TTGCAACTCGTCTCTTCCCATGTGCTGAGAAATTAGGGATGATGGGTGAAGGGTTTGCTT 778
Query 782 GGATTCTCACTGCCAAAAGCATGAACAGTTTTCATG---AGTCCATTGATGATTTCGCAA 838
||||||| ||| ||| |||||||| ||||||||||| ||| |||||| ||||| |||
Sbjct 779 GGATTCTTACTTCCAGAAGCATGAGCAGTTTTCATGATCAGTTCATTGACGATTTAACAA 838
Query 839 AGGAGACAATGGAAGGTGTGGTTGGTTTCAAATCTTACATTCCAATGTCAAAAGAGGTTC 898
||||| ||||||||||||||||||||||||| ||||| || ||||||||||||||| |||
Sbjct 839 AGGAGGCAATGGAAGGTGTGGTTGGTTTCAAGTCTTATATACCAATGTCAAAAGAGCTTC 898
Query 899 ACAATTTCACTTTGAGGTGGAGAAAATCACTGCATGTTGAAGAAGTTATTGGGACTGAGA 958
|||| ||||||||||| ||||||||| |||| | |||||||||||||| ||||| |||||
Sbjct 899 ACAACTTCACTTTGAGATGGAGAAAAACACTCCCTGTTGAAGAAGTTACTGGGAGTGAGA 958
Query 959 TTACTCGGTTGAGCATCTCTGGTATTTGGGCTCACGATATCGCTTGG-GCTCTGGCGAGT 1017
||||||||||||| |||||||| | |||||||| ||| |||||||| | ||||||||||
Sbjct 959 TTACTCGGTTGAGTATCTCTGGCGTATGGGCTCATGATGTCGCTTGGAG-TCTGGCGAGT 1017
Query 1018 GCAGCGGAAGTTATAAGGATGCCAAATGTAACATCAACTCTCCTTGAGGCAATCACAGAG 1077
||||| ||||| | ||||||||||| ||| |||||||||||||||||||| || | |||
Sbjct 1018 GCAGCTGAAGTGACAAGGATGCCAACTGTGACATCAACTCTCCTTGAGGCCATAAAAGAA 1077
Query 1078 AGTAAATTTATA-GGTTTGAGTGGTGACTTCCAATTAGATGATAGGAAGTTGTTATCAGA 1136
|| | |||| | ||| |||||||| |||| || || ||||||| |||||||||||||||
Sbjct 1078 AGCAGGTTTA-AGGGTCTGAGTGGTAACTTTCAGTTGGATGATATGAAGTTGTTATCAGA 1136
Query 1137 CAAGTTTGAGATTGTGAATATGATAGGATCAGGTGAGAGAAGGATAGGATTCTGGAATTT 1196
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1137 CAAGTTTGAGATTGTGAATATGATAGGATCAGGTGAGAGAAGGGTAGGATTCTGGAATTC 1196
Query 1197 TAATGGTAGTTTTAGCAATAGAAGACATTTATCATCTACTCATAACAATCTTGAGACCAT 1256
|||||||||||| |||||||||||||| ||||| ||||||||| ||||||| ||||||||
Sbjct 1197 TAATGGTAGTTTCAGCAATAGAAGACAATTATCTTCTACTCATGACAATCTGGAGACCAT 1256
Query 1257 AATCTGGCCTGGTGGCTCTACTCAAAGTCCAAAAGGGAGTAGTCTAAAACAGAGCGATAG 1316
||| ||||| ||||| ||| |||||||||| |||||||| ||||||| | |||||| |||
Sbjct 1257 AATTTGGCCCGGTGGGTCTGCTCAAAGTCCGAAAGGGAGAAGTCTAAGAGAGAGCGGTAG 1316
Query 1317 AAAAAAGCTGAGGGTT-TTGGTTACGTCTAGCAATAGATTCCCAAGACTGGTGAATGTA- 1374
||||||||| |||||| ||| |||| |||||||||||||||||||||||| |||| ||
Sbjct 1317 AAAAAAGCTTAGGGTTCTTG-TTACATCTAGCAATAGATTCCCAAGACTGATGAAAGTGG 1375
Query 1375 ACAACTGACCCAGTAACACATGATATAATAAATGTCGATGGGTTCTGTATAGAAGTCTTT 1434
| | |||| ||| |||||||||| |||| || |||||| |||||||||||||||||||||
Sbjct 1376 AGA-CTGATCCAATAACACATGAGATAACAATTGTCGAAGGGTTCTGTATAGAAGTCTTT 1434
Query 1435 AATGCTTCCATTGCACCTTTTAACTATGAAGTGGAGTACATACGTTGGCGCAACGGAAGT 1494
| || |||||||||||||| |||||||||||||||||||||||||||| ||| |||| |
Sbjct 1435 CAGGCATCCATTGCACCTTTCAACTATGAAGTGGAGTACATACGTTGGCTCAATGGAACT 1494
Query 1495 AACTACGAC-AATCTTGCATATGTACTTAATAGCCAGAAAGACAAATATGATGCGGCCGT 1553
|||||| || || |||||||||| |||| ||||||||||||||||||||||||| || ||
Sbjct 1495 AACTAC-ACCAAGCTTGCATATGCACTTCATAGCCAGAAAGACAAATATGATGCTGCTGT 1553
Query 1554 GGGAGATATTACTATCACTTG-GAATAGATCGACATACGTTGATTTCACGTTGCCATTCA 1612
|||||||||||| || |||| || |||||||| || |||||||| |||||||||| ||
Sbjct 1554 GGGAGATATTACAATTACTTCCGA-TAGATCGATGTATGTTGATTTTACGTTGCCATACA 1612
Query 1613 CCGAAATGGGTCTTGGAATCGTAGCACTCAA-GGAGAGAAG 1652
| ||||||||||||||||| |||||| ||| |||||||||
Sbjct 1613 CTGAAATGGGTCTTGGAATTGTAGCAG-CAAAGGAGAGAAG 1652
Score = 1042 bits (564), Expect = 0.0
Identities = 784/888 (88%), Gaps = 24/888 (3%)
Strand=Plus/Plus
Query 1654 ATTATAGTTTGGTTGATAGAAAGA-CATGAGAACCCTGAGTTCCAGGGATCTTGGTCC-C 1711
|||||||||||||||||||||||| | ||||||| |||||||| ||||||||| || |
Sbjct 1726 ATTATAGTTTGGTTGATAGAAAGAGC-TGAGAACAAAGAGTTCCAAGGATCTTGG-CCTC 1783
Query 1712 AACAGATTGGAGTTATGCTTTGGTTTGGGTTCTCTACCCTTGTTTATGCTCATAGGGAGA 1771
|||||||||||||| || |||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1784 AACAGATTGGAGTTGTGATTTGGTTTGGCTTCTCTACCCTTGTTTATGCTCATCGGGAGA 1843
Query 1772 GGCTA-AACCACAACTTATCAAGATTTGTAGTTACAGTTTGGATATTTGCGGTGCTCATA 1830
|||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1844 AGCTACAA-CACAACTTATCAAGATTTGTAGTTACAGTTTGGGTATTTGCGGTGCTCATA 1902
Query 1831 CTGGTAACAAGTTACACTGCAACATTGACATCAATGATGACGGTGCAATCGA-TACGATT 1889
|||| |||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 1903 TTGGTTACAAGTTACACTGCAACATTGACATCAATGATGACGGTGCAA-CAAATACGATT 1961
Query 1890 CAACTCTAATAAAAACTATGTGGGTCACCTCTCCGGTTCCCTCATCGCAAAAGCGGCCCT 1949
|||| | ||| || | ||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1962 CAACGCCAATGAAGATTATGTGGGTCACCTCTCGGGATCCCTCATCGCAAATGCGGCCCT 2021
Query 1950 CACCAATTCCAGCATGCAAA-CAATGAGATCACTGGGTCTCAATACTTCAGACGATTATG 2008
||||||||||||| | || | ||||||||| | ||||||||||||||||||| |||||||
Sbjct 2022 CACCAATTCCAGCCT-CAGAGCAATGAGATTATTGGGTCTCAATACTTCAGAAGATTATG 2080
Query 2009 CTCGAGCCTTGTTGGACAAAAATGTCTCACT-TATTGTTAGTGAGTTGCCATACCTCAAA 2067
||| ||| ||| || | |||| ||||||| | |||||||||||||||||||||||| |||
Sbjct 2081 CTCAAGCTTTGATGAATAAAAGTGTCTCA-TATATTGTTAGTGAGTTGCCATACCTGAAA 2139
Query 2068 GTCCTTTTTCGCGATTACCCTAAAGATTTTCTCATGGTCAAGAAACAATATACAACCAAT 2127
|||| || |||| | ||| | |||||||||||||||||| ||||| ||| ||||||
Sbjct 2140 ATCCTCCTTGGCGAGAATCCTGGACATTTTCTCATGGTCAAGACACAATCTACCACCAAT 2199
Query 2128 GGTTTTGGCTTTATGTTCCAGAAGGGCTCCGAGTTGGTGCATAATGTTTCTCGGGAGATC 2187
||||||||||| |||||||||||||| |||||||||| || |||||| || ||||||||
Sbjct 2200 GGTTTTGGCTTCATGTTCCAGAAGGGGTCCGAGTTGGCGCCTAATGTGTCCCGGGAGAT- 2258
Query 2188 T-CGCAGCTAAGGACGAGCGAGAGACTAAACGAGATGGAGAGAAGATGGTTTGAAAAACA 2246
| || |||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 2259 TGCGAAGCTGAGGACAAGCGAGAGGCTAAACGAGATGGAGAGAAGATGGTTTGATAAACA 2318
Query 2247 GTCCTC-ATACCCAACGGATGATACATCAAATCCTCTAACCCT-TGATAGATTCCGCGGT 2304
| | || |||| |||| |||||||||||||||||| ||||||| | |||||||||| |||
Sbjct 2319 G-CTTCCATACACAACCGATGATACATCAAATCCTATAACCCTAT-ATAGATTCCGTGGT 2376
Query 2305 CTGTTTATGATCACTGGAGTTTCATTCGCTTTCTCTCTTGCAGTACTTTTCATCCTCTGG 2364
||||||||||||| |||||||||||||||||| |||||||||||||| |||| || |||
Sbjct 2377 TTGTTTATGATCACCGGAGTTTCATTCGCTTTCGCTCTTGCAGTACTTCTCATTCTTTGG 2436
Query 2365 CTCCGAGAAAAATGGGATATTCTTGTGAATTCGGTCAATATATTCCTCTCACGACGACTA 2424
|||||||||| |||||| || |||||||||||||||||||||| | |||||| ||||||
Sbjct 2437 CTCCGAGAAAGATGGGAAATCCTTGTGAATTCGGTCAATATATACTTCTCACAACGACTT 2496
Query 2425 AGACATTTCAGGATCATCTTCACAAGAACTATCCATCCTAGTCCCCTCG------ATAAC 2478
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 2497 AGACATTTCAGGATCCTCTTCACAAGAACTATCCATCCTAGTCCCCTCGGCCTCGATAAC 2556
Query 2479 ACTATTGGCGAGAATGCTATTCAAATGGCTCAACGTAACAGACGATAG 2526
| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2557 CCCATTGGCGAGAATGCGGTTCAAATGGCTCAACGTAACAGACGATAG 2604
> AT3G07520.1 | Symbols: ATGLR1.4, GLR1.4 | glutamate receptor
1.4 | chr3:2394891-2398291 REVERSE LENGTH=2816
Length=2816
Score = 307 bits (166), Expect = 3e-82
Identities = 879/1206 (73%), Gaps = 118/1206 (10%)
Strand=Plus/Plus
Query 128 TAGGGTTGGTTTTGGATTTGGGTTCCGTGGAAGGGAAGATAGTGAGAAGC-TCTG-TTTC 185
|||| ||||| |||| |||||||| ||||||| ||| | |||| || | || | ||||
Sbjct 143 TAGGTTTGGTGGTGGACATGGGTTCCATGGAAGGCAAGCTTGTGACAA-CTTC-GATTTC 200
Query 186 TATGGCGCTTTCCGATTTCTACGCCAT-TC-ATAATGATTACAAAACAAGAGtctctctc 243
||||||||||| |||||||| ||| || | |||| || | ||||||||||||| ||
Sbjct 201 GATGGCGCTTTCTGATTTCTA--TCATGTCAACAATGGCTATAGAACAAGAGTCTCTGTC 258
Query 244 tcagt-cagaaactctcatggagagcctcttctta-ctctctcttctGCTGTAGATCTAT 301
| | | |||| |||||||||| || |||| || | ||||| || | || | || ||
Sbjct 259 TTA-TCCAGAGACTCTCATGGTGACCCTC-TCCAAGCTCTCGCTGCAGCCATGGACCTCC 316
Query 302 TGCAAACTGAAGGAGTAGAAGCGA-TTATTGGCGGGA-ATTCGTTG-TTGGAAGCAAAGC 358
||||||||||| ||| ||||| | || |||| ||| | |||||| || ||||||||
Sbjct 317 TGCAAACTGAACAAGTGGAAGC-ACTTGTTGG-TGGACAATCGTTGCTT-GAAGCAAAAA 373
Query 359 TTTTAGGGGAACTTGGAGAGAAAGCTAGGGTTCCTA-TGATTTCACTTGACTCTCCTATT 417
||||| || ||||| |||||| ||| ||||| | |||||| ||| || ||| | |
Sbjct 374 ATTTAGCAGAGCTTGGGGAGAAAACTAAAGTTCC-AGTGATTT--CTT--CTTTCCAAGT 428
Query 418 TCAT-GTTCATTGAG--T----AAATACAGTCACTTGATCCAAGCCACACATGATTCCA- 469
|| | | || ||||| | ||||| | | |||| || ||||| || ||||| | ||
Sbjct 429 TCCTAGCTCGTTGAGCTTGGCCAAATATAATTACTTTATTCAAGCTACTCATGA-TACAT 487
Query 470 CCTCAGAGGCTAAGGGGATTACA--TCT-TTTATTAATGGGTTTGATTGGA-ACAGTGTT 525
|||| || || ||||| ||| || ||| || | ||| |||||||||| | | | |
Sbjct 488 CCTCTGAAGCAAAGGGAATTGCAGCTCTGTTCAGCAAT---TTTGATTGGAGA-ACCGCT 543
Query 526 GCTCTTGTTTATGAAGATCATGATGATTGGAAAGACTCTATGCAA-CTTCTTG-TGGACC 583
| |||| | || || ||| ||||||| |||| ||| ||| ||| ||| | | |||| |
Sbjct 544 GTTCTTATCTACGAGGATGATGATGACTGGAGAGAGAGTATACAACCTT-TGGTTGGA-C 601
Query 584 ATTTCCATGAGAACAATGTTCGTGTAAAGTCCAAGATTGG--TTTTACTGTCTCTTCGAG 641
||||||| ||||| ||| | ||| |||| || |||| ||||||| || |
Sbjct 602 ATTTCCAACAGAACGCCATTCACATTGAGTACAAG-GCGGAATTTT-CTGTCTCATCTAA 659
Query 642 TGAGGATTCTATGATGGATCGGTTACGGAAGCTTAACGCCTTGGGAACAACTG-TCTTTG 700
|||||| | ||| ||| | | | || | ||| |||| |||| ||| | || | | ||||
Sbjct 660 TGAGGAATGTATCATGAAGCAGCTAAGAAAGTTTAAGGCCTCGGGGATAA-GGATTTTTG 718
Query 701 TTGTTCAC-TTGTC-GAAAGTTATGGCAACTTATCTCTTCCCATGTGCT-GAGAAATTAG 757
||| ||| || || ||| | || |||| | |||||| ||||||||| | || ||||
Sbjct 719 TTGCGCACATT-TCTGAACG-AATTGCAAATCGTCTCTTTCCATGTGCTCG-GAGGTTAG 775
Query 758 GGATGATGG-GTGAAGGTTTTGCTTGGATTCTCACTGCCAAAAGCATGAACAGTTTTCAT 816
| ||||||| | ||||| | ||||||||| ||||| || | ||||||||| | ||||||
Sbjct 776 GAATGATGGAG-GAAGGATATGCTTGGATCCTCACAGCGAGAAGCATGAATAATTTTCA- 833
Query 817 GAGTCCATTGATGATTTCGCAAAGGA-GACAATGGAAGGTGTGGTTGGTTTCAAATCTTA 875
|| || || |||| ||||| || || ||||||||||||| |||||||||| |||||
Sbjct 834 -AG-ACACAAATTATTTAGCAAAAGAGGA-AATGGAAGGTGTGATTGGTTTCAAGTCTTA 890
Query 876 CATTCCAATGTCAAAAGAGGTTCACAA-TTTCACTTTGAGGTGG-AGAAAATCACTGC-A 932
||||| || | | ||| ||||||| ||| |||||||| ||| || | ||| ||| |
Sbjct 891 TATTCCGTTGACTGAGGAGCTTCACAACTTT-ACTTTGAGATGGAAG-AGATCTTTGCGA 948
Query 933 TGTTGAAGAAGTTATTGGGACTGAGATTACTCGGTTGAGCATCTCTGGTATTTGGGCTCA 992
| |||| | | | | || |||| || ||||| | | | | || ||||||||
Sbjct 949 -CTCGAAG-A---A----G--T-AG-TTACAAGGATGAGCGTTTGTAGCATATGGGCTCA 995
Query 993 CGATATCGCTTGG-GCTCTGGCGAGTGCAGCGGAAGTTATAAGGATGCCA--AATGT-A- 1047
|||||| |||||| | ||| || || ||||| |||||| || | | ||| ||| |
Sbjct 996 CGATATAGCTTGGAG-TCTTGCAAGAGCAGCAGAAGTTGCAAAGTTACCAGGTTTGTCAG 1054
Query 1048 -ACATCAACTCTCCTTGAGGC-AAT-CACAGAGAG-TAAATTTATAGGTTTGAGTGGTGA 1103
| || || || |||||||| | | || |||| | ||| || |||||||||||||||
Sbjct 1055 TATAT-GAC-CTGCTTGAGGCTATTCCAGAGAGTGCTAAGCATAAAGGTTTGAGTGGTGA 1112
Query 1104 CTTCCAATTAGAT-GATAGGAAGTTGT-TATCAGACAAGTTTGAGATTGTGAATATGATA 1161
| || |||| || |||| |||||| | | ||||||||||||||||||||||||||||||
Sbjct 1113 CATCAAATT-CATCGATAAGAAGTT-TATCTCAGACAAGTTTGAGATTGTGAATATGATA 1170
Query 1162 GG-ATCAGGTGAGAGAAG-GATAGGA-TTCTGGAATTTTAATGGTAGTTT--T-AGCAAT 1215
|| | |||||||||||| | ||||| || ||||||| | |||||||| | ||||||
Sbjct 1171 GGGAG-AGGTGAGAGAAGTG-TAGGACTT-TGGAATTCT---GGTAGTTTCATCAGCAAT 1224
Query 1216 AGAAGAC-A--TTTATCATCTACTCATAA-CAATCTTGAGACCATAATCTGGCCTGGTGG 1271
|||||| | ||| || ||||| || || || |||||||| || ||||||||||| ||
Sbjct 1225 AGAAGAAGACGTTTGTCTTCTAC-CA-AAGCA--CTTGAGACAATCATCTGGCCTGGAGG 1280
Query 1272 CTCTAC 1277
|||||
Sbjct 1281 GTCTAC 1286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125367190557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5