BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357056
Length=642
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48510.1 | Symbols: | BTB/POZ domain-containing protein | c... 689 0.0
> AT5G48510.1 | Symbols: | BTB/POZ domain-containing protein |
chr5:19658080-19658882 FORWARD LENGTH=675
Length=675
Score = 689 bits (373), Expect = 0.0
Identities = 513/577 (89%), Gaps = 23/577 (4%)
Strand=Plus/Plus
Query 79 TCAGCTATCTCTGCCCACAAACTTATTCTGGCATCAAGATCGGAGGTGTTTAAGAAGATG 138
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 109 TCAGCTATCTCTGCCCACAAACTTATTCTGGCATCAAGATCGGAGGTTTTTAAGAATATG 168
Query 139 TTGGAATTAGACGAGTTCAAGACTTCGACTAAACATGTGGAAACAATCACTCTCTCGGAG 198
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 169 TTCGAATTAGACGAGTTCAAGACTTCGACTAAACATGTGGAAACAATTACTCTTTCAGAG 228
Query 199 ATGAAACAAGAAGAGTTAGAAGCTTTTGTTGAGTTTATTTACAGTGATGGCTCAAAGCTT 258
|||||||| ||||||||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct 229 ATGAAACATGAAGAGTTAGAAGCTTTTGTTGAGTTTATATGCAGTGATGGCTCAATGCTT 288
Query 259 TCTGCCAACGTGAAACAACATGCTCGGTCACTCTATCTTGCGGCTGATAAATACGAGATT 318
|||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 289 TCTGCCAACGTGAAACAACATGCTCGCTCACTCTATCTTGCGGCTGATAAGTATGAGATT 348
Query 319 ATGCATCTACGAGACCTATGCAGAGCCGAGCTTATATCTTCTCTGAGTTTCTCGAATTCT 378
||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||
Sbjct 349 CTGCATCTACGAGACCTATGCAGAACCGAGCTTATATCTTCTCTGAGTTTGTTGAATTCT 408
Query 379 CTTGACATCCTTGAGCTCGCGCAAATCCCTTTTGACAAAGTCCTTCA-CGATGCA-GCCT 436
|||||| |||||| |||||| ||||||||||||||||||||||| || ||||| | | |
Sbjct 409 CTTGACCTCCTTGTGCTCGCTCAAATCCCTTTTGACAAAGTCCT-CAACGATGAAAG--T 465
Query 437 TT-AGTTTTATCAAAAAGAATTTAAAAACGATTGATAGCTCTGATGAGTTCAAGTTGTTC 495
|| |||| ||| ||||| ||| ||| ||||||| |||||||||||||||||||||||||
Sbjct 466 TTCAGTTATATAAAAAATAATATAAGTACGATTGCTAGCTCTGATGAGTTCAAGTTGTTC 525
Query 496 ATCGCCAGTAACCCAAATCTTGCCGTGGAGATAGTGAAGGCTTCTCT--T-ACT-TGTAC 551
||||| |||||||||||||||||||||||||| |||||| |||||| | ||| | |||
Sbjct 526 GTCGCCGGTAACCCAAATCTTGCCGTGGAGATAATGAAGGTTTCTCTCATTACTCT-TAC 584
Query 552 TTTAGGCTGTTC-TAGTTGTGGTTACAA-CTATACTCCTC--G-TAATGGAAGCTGTTGT 606
|||| ||||||| | | |||||| ||| | ||| || || | || || | |||||||
Sbjct 585 TTTACGCTGTTCCTCCT-GTGGTT-CAAACCATAGTCTTCAAGGTA-TGTA--CTGTTGT 639
Query 607 AGTTGTGGTCGC-ATCGGTACTCTTCGTTTGATCTAG 642
| |||| ||||| | ||||||||||||||||||||||
Sbjct 640 AATTGTTGTCGCTA-CGGTACTCTTCGTTTGATCTAG 675
Score = 119 bits (64), Expect = 4e-26
Identities = 68/70 (97%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 1 ATGGCAACTCCAACCAACAAAGAGCACTTCTCCGGTGGACTTGCAAAGGTTTTGGCAGAA 60
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCAACTCCAACCAACAAAGAGCATTTCTCGGGTGGACTTGCAAAGGTTTTGGCAGAA 60
Query 61 AAATGGCAAG 70
||||||||||
Sbjct 61 AAATGGCAAG 70
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30994468699
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5