BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg357068

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G48580.1 | Symbols: FKBP15-2 | FK506- and rapamycin-binding ...   826    0.0  


> AT5G48580.1 | Symbols: FKBP15-2 | FK506- and rapamycin-binding 
protein 15 kD-2 | chr5:19695929-19698712 REVERSE LENGTH=1179
Length=1179

 Score =  826 bits (447),  Expect = 0.0
 Identities = 477/492 (97%), Gaps = 0/492 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGAGCAAGATGAGTCTCCATTGCTCTCTCTTTTTGATCTTCTTCTCTCTCATTTCA  60
            |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct  461  ATGGCGAGCAAGATGAGTCTCCGTTACTCTCTCTTTTTGATCTTCTTCTCTCTCATTTCA  520

Query  61   CTCCAAGGTTTTGCCAAGAAGACTGGAGATGTGTCGGAATTGCAGATCGGTGTCAAGTTT  120
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  521  CTCCAAGGTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAGTTT  580

Query  121  AAGCCAAAAACATGTGAAGTTCAGGCTCATAAAGGTGATACGATCAAGGTGCACTATAGG  180
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  581  AAGCCAAAAACATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAGGTGCACTATAGG  640

Query  181  GGGAAACTTACTGATGGAACTGTATTCGATTCAAGCTTTGAAAGGGGTGATCCGTTTGAG  240
            |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct  641  GGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGTGATCCGTTTGAG  700

Query  241  TTTAAATTAGGAAGTGGTCAGGTTATCAAAGGTTGGGATCAAGGCTTGCTAGGAGCGTGT  300
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  701  TTTAAATTAGGAAGTGGTCAGGTTATCAAAGGTTGGGATCAAGGTTTGCTAGGAGCGTGT  760

Query  301  GTAGGTGAGAAGAGGAAGTTAAAGATACCTGCAAAACTTGGATATGGAGAGCAAGGCTCT  360
            |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct  761  GTAGGTGAGAAGAGGAAGTTAAAGATACCTGCTAAACTTGGATATGGAGAACAAGGCTCT  820

Query  361  CCACCTACTATCCCCGGTGGTGCAACATTGATATTTGACACAGAGCTTATTGCGGTAAAT  420
            ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct  821  CCACCTACTATCCCCGGTGGTGCAACACTGATCTTTGACACAGAGCTTATTGCGGTAAAT  880

Query  421  GAAAAACCAGCTGGTGGTGAAGAAGACGGAGGAGATGAGGACGATGAGGGATATGGAAAT  480
            |||||||||||||||||||||||| ||||||| ||||| || ||||||||||||||||||
Sbjct  881  GAAAAACCAGCTGGTGGTGAAGAATACGGAGGGGATGAAGATGATGAGGGATATGGAAAT  940

Query  481  GACGAGCTATGA  492
            ||||||||||||
Sbjct  941  GACGAGCTATGA  952



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23459346649


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5