BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg357071

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G48630.2 | Symbols:  | Cyclin family protein | chr5:19721503...   593    3e-169


> AT5G48630.2 | Symbols:  | Cyclin family protein | chr5:19721503-19723168 
REVERSE LENGTH=980
Length=980

 Score =  593 bits (321),  Expect = 3e-169
 Identities = 358/376 (95%), Gaps = 2/376 (1%)
 Strand=Plus/Plus

Query  1    ATGGAGATGAAGGTCTTGGAAGCATTGAACTTCTATCTTGTTGTATTCCACCCATACCGA  60
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  446  ATGGAGATGAAGGTCTTGGAAGCATTGAACTTCTATCTTGTTGTATTCCACCCATATCGA  505

Query  61   TCTCTGCCTGAGTTCTCT-CAGGATTCTGAAATTTATGACACAAGTATGACCCATTTAAC  119
            |||||||||||||||| | |||||||||| |||  ||||||| |||||||||||| ||||
Sbjct  506  TCTCTGCCTGAGTTCT-TGCAGGATTCTGGAATCAATGACACTAGTATGACCCATCTAAC  564

Query  120  TTGGGGTCTTGTTAACGACACATACAGAATGGACCTCATCCTTATACATCCGCCGTTTCT  179
            |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  565  TTGGGGTCTTGTCAACGACACATATAGAATGGACCTCATCCTTATACATCCGCCGTTTCT  624

Query  180  CATCACACTCGCTTGCATTTACATTGCTTCTGTACACAAAGAGAAAGACATAAGGACTTG  239
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct  625  CATAACACTCGCTTGCATTTACATTGCTTCTGTACACAAAGAGAAAGACATAAAGACATG  684

Query  240  GTTTGAAGAGCTTTTTCTCGACATGAACATTGTGAAGAATATTGCAATGGAGATATTGGA  299
            |||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||
Sbjct  685  GTTTGAAGAGCTTTCTGTCGACATGAACATTGTGAAGAATATTGCAATGGAGATATTAGA  744

Query  300  TTTCTATGAAAACCATAGACTGTTCACGGAGGAGAGAGTTCACGCCGCCTTCAACAAACT  359
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  745  TTTCTATGAAAACCATAGACTGTTCACGGAAGAGAGAGTTCACGCCGCCTTCAACAAACT  804

Query  360  TGCTACAAACCCGTAA  375
            |||||||||||| |||
Sbjct  805  TGCTACAAACCCATAA  820



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17643979899


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5