BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357124
Length=2640
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48750.1 | Symbols: | Cytochrome b561/ferric reductase tran... 909 0.0
AT5G48990.1 | Symbols: | Galactose oxidase/kelch repeat superf... 516 5e-145
AT5G48980.1 | Symbols: | Galactose oxidase/kelch repeat superf... 459 8e-128
AT1G60570.1 | Symbols: | Galactose oxidase/kelch repeat superf... 69.4 2e-10
> AT5G48750.1 | Symbols: | Cytochrome b561/ferric reductase transmembrane
with DOMON related domain | chr5:19770052-19770819
REVERSE LENGTH=768
Length=768
Score = 909 bits (492), Expect = 0.0
Identities = 658/739 (89%), Gaps = 8/739 (1%)
Strand=Plus/Plus
Query 26 TTTTTGTGGTTTTGTGTTTTCTGTTCGGGCTCGCTCCATACTTCACTAGAGCAACAACCG 85
||||||||| ||||||||||||||||| | ||||||| ||| |||||||||||||||
Sbjct 23 TTTTTGTGGGTTTGTGTTTTCTGTTCGTTTTGGCTCCATGCTTTACTAGAGCAACAACCA 82
Query 86 ATGAACTTCAAGCTAGATGCGACTCACACAGCTTTAACAACGGCAAACACTTCCGTTCAT 145
||||| |||||| ||| |||||||| |||| ||| ||||| |||||||||||||||||||
Sbjct 83 ATGAAGTTCAAGTTAGCTGCGACTCTCACAACTTCAACAATGGCAAACACTTCCGTTCAT 142
Query 146 GCGTTGACCTTCCCGTGTTAGATTCTTTTCTACACTTCAGTTACGTTCGAGAAACCGGAG 205
| ||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 143 GTGTTGACCTTCCTGTGTTAGATTCGTTTCTACACTACAGTTACGTTCGAGAAACCGGAG 202
Query 206 TGCTTGAAGTTGCGTATCGTCACATCAACGTTGAATCTTCTAGGTGGATCGCTTGGGGGA 265
||||||||||||| |||||||| | |||| | || |||||||| ||||| |||||||| |
Sbjct 203 TGCTTGAAGTTGCATATCGTCATACCAACATCGAGTCTTCTAGTTGGATTGCTTGGGGCA 262
Query 266 TAAACCCGACAAGCAAAGGCATG-TCAGGTTCTCAAACTCTCTTGGCTTACCGTAATTCC 324
|||||||||| |||||||||||| | |||| ||||||| || |||||||||||||| |||
Sbjct 263 TAAACCCGACGAGCAAAGGCATGAT-AGGTGCTCAAACACTTTTGGCTTACCGTAACTCC 321
Query 325 ACGTCTGGTATTATGCGTGTC-TATACTTCCTCAATCAAA-GGCTACTCACCTACACTTC 382
||||| ||| ||||||||| | |||||||||||||| ||| |||||| |||||| ||||
Sbjct 322 ACGTCCGGTTTTATGCGTG-CATATACTTCCTCAAT-AAATGGCTACACACCTATGCTTC 379
Query 383 AAGAAGGTCCTCTCAGCTTCCGTGTATTGCAACTATCCGGTGAATATCTCAATGGAGAGA 442
||||||| ||||| ||||| |||||| ||||||||||| ||||||||||||| ||||||
Sbjct 380 AAGAAGGCCCTCTGAGCTTTCGTGTAACGCAACTATCCGCTGAATATCTCAATAGAGAGA 439
Query 443 TGACTATATTTGCTACTATAGTGTTGCCTTCTAACATAACCGTCGTGAATCATTTATGGC 502
||||||||||||| ||||| |||| ||| ||||||| |||||| || |||||||||||||
Sbjct 440 TGACTATATTTGCCACTATGGTGTGGCCGTCTAACACAACCGTTGTCAATCATTTATGGC 499
Query 503 AAGACGGTCCCTTGAAGGAAGGTGATAGACTTGGGATGCACGCCATGAGTGGAGATCATC 562
|||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 500 AAGACGGTCCGTTGAAGGAAGGTGATAGGCTTGGGATGCACGCCATGAGTGGAAATCATC 559
Query 563 TTAAATCCACGGCTACTTTGGATTTGCTGTCCGGACAAGTCACGACCTCAAAAGCAGCTA 622
| ||||||| ||||| |||||||||| ||||||||||||||| |||| | ||||||||||
Sbjct 560 TCAAATCCATGGCTAATTTGGATTTGTTGTCCGGACAAGTCATGACCACTAAAGCAGCTA 619
Query 623 ACGATAACATGTTACTAGTCAAAAATATCCATGGACTAGTGAACGCGGTGTGTTGGGGTA 682
| |||||||||||||||||||||| || |||||||||||||| || ||||||||||| |
Sbjct 620 ATGATAACATGTTACTAGTCAAAAGCATTCATGGACTAGTGAATGCAGTGTGTTGGGGGA 679
Query 683 TTTTCATGCCTATTGGTGTCATAGCTGCAAGGTACATGAGGACCTACAAAGGACTGGATC 742
||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 680 TTTTCATACCCATTGGTGTCATGGCTGCAAGGTACATGAGGACCTACAAAGGACTGGACC 739
Query 743 CCA-TGTGGTTCTACATAC 760
||| | |||||||||||||
Sbjct 740 CCACT-TGGTTCTACATAC 757
> AT5G48990.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:19862289-19863625 FORWARD LENGTH=1337
Length=1337
Score = 516 bits (279), Expect = 5e-145
Identities = 516/624 (83%), Gaps = 41/624 (7%)
Strand=Plus/Plus
Query 2039 ACTTTGATGGGACTATC-TATTTAGCAGGAAGCTCTGAAAATCCAGATTCTTTGAACTGT 2097
||||| |||||| | | ||||| |||||||||||||||| ||||||||||||||||||
Sbjct 566 ACTTTAATGGGAGGA-CGTATTTCCCAGGAAGCTCTGAAAAGCCAGATTCTTTGAACTGT 624
Query 2098 GTTGAAATGTACAACAC-AATGACTCGA-ACTTGGAATCCCGTGCC-GCCCAGAAGACGG 2154
|||||| |||||||||| ||| |||| | ||||||||||||||||| |||| || |||
Sbjct 625 GTTGAAGTGTACAACACAAAT-ACTC-AGACTTGGAATCCCGTGCCTCCCCA-AAAACGA 681
Query 2155 ATATTCAAATT-GGAAAATATGGAAGGAAAGATTTACGTGA-ACGTTTGTGTAGAG--TC 2210
| | ||||||| || |||||||||||||||||||||| | | | |||| |||| ||
Sbjct 682 AAACTCAAATTCGG-AAATATGGAAGGAAAGATTTACAT-ACCCCCTTGTCAAGAGAATC 739
Query 2211 TACTAAGG-AGGTTGT-GCTTGT-AACGCCAAAGATTATGACATGGGAAGCGTTA-AATT 2266
| | ||| ||| ||| || | | ||| |||||| || |||||||||||||| || |||
Sbjct 740 -A-T-AGGAAGGCTGTGGC-TCTAAAC-CCAAAGGTTTTGACATGGGAAGCGGTAGGATT 794
Query 2267 ---T--GGATTTGGATCGGGGTTCTCTTTGTACGATAGATAACGTAGTCTATCT-TTATA 2320
| | |||||||| |||||||| |||||| ||||| ||| ||| |||| | ||||
Sbjct 795 GGGTACGAATTTGGATAGGGGTTCTTTTTGTATGATAGGGAACATAGCCTAT-TGTTATG 853
Query 2321 ACCCTAGTGGAGTA-TTTCTATTTA-GAAAAGGTTTCATTAAGGAAGCAGTAGTTTGGGG 2378
|||||||||| | | ||| || | | || || || | ||||| | || ||| |
Sbjct 854 ACCCTAGTGG-GAAGTTTAGATGGATG-AATTGTAACACTGCGGAAG--G-AGACTGGAG 908
Query 2379 AATATTACG-GGGTTTAGAAAGGCTGCCTAAGTTTGCTAAATACAGTGCTGTTAAATTAG 2437
| |||| | |||||||||| |||| ||||||||||||| ||| ||| ||||||||||||
Sbjct 909 CAGATTA-GAGGGTTTAGAAGGGCTACCTAAGTTTGCTAGATATAGTACTGTTAAATTAG 967
Query 2438 CGGATTATGGTGGTAAGCTGGTTGTTTTGTGGGACAAGTATGTAGCTGCAAGTGGGTATA 2497
|||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 CGGAATATGGCGGGAAGCTGGTTGTTTTGTGGGACAAGTATGTAGCTGCAAGTGGGTATA 1027
Query 2498 AGGAGAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACAATGAAGAGATTT 2557
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1028 AGGAGAAGATGATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACAGTGAAGAGATTT 1087
Query 2558 GGGGGAAGGTCGAGTGGTTTGATGCGGTGCTTAGAGTCCCTAAGTCTTACAAAATCTTGT 2617
|||||||||||||||||||||||||||| |||| ||||||||||||||| ||| || | |
Sbjct 1088 GGGGGAAGGTCGAGTGGTTTGATGCGGTTCTTACAGTCCCTAAGTCTTATAAATTCGTCT 1147
Query 2618 GTGCTAC-TGCTGCTACTCTTTGA 2640
|||||| | |||||||| |||||
Sbjct 1148 GTGCTAAAT-CTGCTACTGTTTGA 1170
> AT5G48980.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:19860708-19862018 FORWARD LENGTH=1311
Length=1311
Score = 459 bits (248), Expect = 8e-128
Identities = 405/477 (85%), Gaps = 26/477 (5%)
Strand=Plus/Plus
Query 1586 TCACGGACGGCCAACCACCGTGGAAGAAGAAGAAGCCGTCGAAAGATCCGACTCCGAACC 1645
||| ||||||||||||||| |||||||||||||||| |||||| ||| ||||| |||| |
Sbjct 54 TCAAGGACGGCCAACCACCATGGAAGAAGAAGAAGCTGTCGAACGATACGACTTCGAATC 113
Query 1646 CGTCCA-TTCCATATGATTTGATAGTGAGCATATTAGCCCGTGTCTCGAGATCGTATTAC 1704
||| || ||||||||||| | ||| ||| ||| |||||||| ||||||||||||||||||
Sbjct 114 CGT-CACTTCCATATGATGTAATACTGATCATCTTAGCCCGCGTCTCGAGATCGTATTAC 172
Query 1705 CCAAAACTCTCCTTAGTCTCCAAAAGCTTCCGATCGATCCTTGCTTCACCGGAGCTATAC 1764
|||| ||||||||||||||||||||||||||||| |||||| ||||||||||||| |||
Sbjct 173 ACAAATCTCTCCTTAGTCTCCAAAAGCTTCCGATCAATCCTTACTTCACCGGAGCTTTAC 232
Query 1765 CAAACCCGAACCCTCTTAGGCAAAACCGAGACTTTTCTCTACGTTTGCTTACGCTTCCCT 1824
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 233 AAAACCCGAACCCTCTTAGGCAAAACCGAGAATTTTCTCTATGTTTGCTTACGCTTCCCT 292
Query 1825 GATGAAGCTAACCCTCGCTGGTTCACTCTTTACCAG-AAACCTAATCAAACCCTAAC--- 1880
||||||||||| ||||||||||||||||| ||| || ||||||||||||||||||||
Sbjct 293 GATGAAGCTAATCCTCGCTGGTTCACTCTCTAC-AGGAAACCTAATCAAACCCTAACCGA 351
Query 1881 T-a-a-------gaagaagaagaagaagaagaa-a-g-aGGAG---TCAACTGTTAAACT 1925
| | | ||||||||||||||||||||| | | ||||| |||| |||||| ||
Sbjct 352 TCACACCACTAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGAGAAGTCAAGTGTTAATCT 411
Query 1926 TTTGGCTCCAACCCCAGTTCTCAATTCTCCTCCTTTGGAATGGTCAAG-TCTCATCGCTG 1984
|||||||||| | || |||||||||||| |||| ||||||||||| | | |||| |||
Sbjct 412 GTTGGCTCCAATCTCAATTCTCAATTCTCATCCTGTGGAATGGTCA-GCTATCATATCTG 470
Query 1985 TTGGTTC-TAATCTTTACGCCATTACCGCAGCCATCGACGATTCTCCATGCTCTAAC 2040
||| | | | |||| |||||||||| |||| |||||| | |||| | |||||||
Sbjct 471 TTGAT-CATTATCTCTACGCCATTAGTGCAGACATCGAAAAGGCTCCGTACTCTAAC 526
Score = 318 bits (172), Expect = 1e-85
Identities = 227/254 (89%), Gaps = 2/254 (1%)
Strand=Plus/Plus
Query 2388 GGGTTTAGAAAGGCTGCCTAAGTTTGCTAAATACAGT-GCTGTTAAATTAGCGGATTATG 2446
|||||||||| |||| ||||||||| ||| ||| | | |||| |||| ||||| ||||
Sbjct 964 GGGTTTAGAAGGGCTACCTAAGTTTTCTAGATATTCTAG-TGTTCAATTGGCGGAATATG 1022
Query 2447 GTGGTAAGCTGGTTGTTTTGTGGGACAAGTATGTAGCTGCAAGTGGGTATAAGGAGAAGA 2506
| || |||||||| ||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1023 GCGGGAAGCTGGTGGTTTTGTGGGACAAGTATGTACCTGCGAGTGGGTATAAGGAGAAGA 1082
Query 2507 TGATTTGGTGTGCAGAGATTTCGCTTGAAAAGCGCAACAATGAAGAGATTTGGGGGAAGG 2566
||||||||||||||||||||||||| ||||| || ||| | |||||||||||||||| |
Sbjct 1083 TGATTTGGTGTGCAGAGATTTCGCTCGAAAAACGTAACGGTAAAGAGATTTGGGGGAACG 1142
Query 2567 TCGAGTGGTTTGATGCGGTGCTTAGAGTCCCTAAGTCTTACAAAATCTTGTGTGCTACTG 2626
| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1143 TTGAGTGGTTTGATGCTGTGCTTACAGTCCCTAAGTCTTACAAAATCTTGTGTGCTACTG 1202
Query 2627 CTGCTACTCTTTGA 2640
||||||||||||||
Sbjct 1203 CTGCTACTCTTTGA 1216
> AT1G60570.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:22311836-22312981 FORWARD LENGTH=1146
Length=1146
Score = 69.4 bits (37), Expect = 2e-10
Identities = 71/87 (82%), Gaps = 4/87 (5%)
Strand=Plus/Plus
Query 2505 GATGATTTGGTGTGCAGA-GATTTCGCTTGAAAAG-CGCAACAATGAAGAGATTTGGGGG 2562
|||||| |||||||| || |||| | |||| |||| | | | || |||||||||||||
Sbjct 1005 GATGATGTGGTGTGC-GATGATTGCACTTG-AAAGAAGTGATAGTGGAGAGATTTGGGGG 1062
Query 2563 AAGGTCGAGTGGTTTGATGCGGTGCTT 2589
|||||||||||||||| | | ||||||
Sbjct 1063 AAGGTCGAGTGGTTTGGTCCAGTGCTT 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131086222059
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5