BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357131
Length=630
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39560.1 | Symbols: | Galactose oxidase/kelch repeat superf... 196 2e-49
> AT4G39560.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:18382291-18383803 REVERSE LENGTH=1513
Length=1513
Score = 196 bits (106), Expect = 2e-49
Identities = 461/625 (74%), Gaps = 54/625 (9%)
Strand=Plus/Plus
Query 1 ATGCTGATGGAGCGGAGATACCCA-GTTGCTAGTGTTGTTGATGGAAAGATATATGTAGT 59
|||||| ||||||||| || | || | || | |||| ||||||| ||||||||||| |
Sbjct 547 ATGCTGGTGGAGCGGA-ATTCACATGCAGCCAATGTTATTGATGGGAAGATATATGTTGC 605
Query 60 AGGAGGCTTG-AAAGACTTTGATTCCTCTAAATGGATGGAAGTTTTCGATCCAAAAATTC 118
||||||| | | ||||| ||||||| || |||||||||||||||||| ||||| |
Sbjct 606 AGGAGGC-AGCAGAGACTCCAATTCCTCCAATTGGATGGAAGTTTTCGATATAAAAACCC 664
Query 119 AAACTTGGGAGTTTGTGTTGAGCCC--TC-CTACTCT-CATG-AAGAGATTTATATTCTG 173
||||||||||| |||| | | ||| || | | | ||| | ||| |||| |
Sbjct 665 AAACTTGGGAGCCTGTGCTAAACCCTATCGC-A-GATGGATGTGACAGACGTATACGCAA 722
Query 174 GACCGCAGTGATTGAAGAAGAAATCTACATGTTTGGGGAGAA-----T-GGTATGGCTTA 227
|| ||||||||||||||||| |||| | |||||||| | || | ||| | |||||
Sbjct 723 GAGCGCAGTGATTGAAGAAGCTATCTGCTTGTTTGGGTATAAGGGTGTGGGTGTTGCTTA 782
Query 228 CAAGCCTGAAG-A-AGATACAT-GGAA---AT--CTGAAGTG----A--T-G--TCAGTA 270
||| || ||| | ||||| || |||| || |||||| | | | | || |
Sbjct 783 CAA-CC-CAAGAATAGATAAATGGGAAGCGATAGGAGAAGTGAATTATTTGGATTTAGGA 840
Query 271 GGGGTA--GATTCTCATTGCGTGGTAGATAACGTACTCTATCGTTATTGTGATTTTGACG 328
||||| | |||| ||||||| ||||||| || || ||| |||| || || | ||||
Sbjct 841 TGGGTATGGCTTCTTGTTGCGTGATAGATAATGTGCTGTATTGTTACAGTAATATAGACG 900
Query 329 GGATC-AATTGGTACGACTC-AGAGATAGGACACTGGAGAGAA-TTGAAGGGTTTGGAAG 385
| ||| |||| ||| ||||| | |||||||| ||||| ||| | |||||||||||||
Sbjct 901 GAATCAAATT-GTATGACTCTA-AGATAGGATGCTGGA-TGAAGCTCAAGGGTTTGGAAG 957
Query 386 GATTGCCTGAGTTTGCTAGATATAGTAATGTTT-ATTTGGTGGATTATGGTGGAAAGATA 444
||||||||||||||||||| ||| | ||||| ||| | |||||||||||| |||||
Sbjct 958 GATTGCCTGAGTTTGCTAGTTATTCTTATGTTAGATTAGC-GGATTATGGTGGGAAGATG 1016
Query 445 GCGGTTTTTTGGGACAAGGATTTGCCTTCTAGTGGTTGTAAGAGCAGGGCGATTTGGTGT 504
|||||||| ||||||||| || ||| ||| ||| ||| | || || ||||||||||
Sbjct 1017 GCGGTTTTGTGGGACAAG--TTA-CCTACTACTGGCAATAATAACATGGTGATTTGGTGT 1073
Query 505 GCGGTGATTTCCCTTGAAA-GATGCAATAATAGTCGGGAGATTTGGGGAAAGGTTGAGTG 563
||||| || | ||||||| | || | ||| | | |||||||| | |||||||||
Sbjct 1074 GCGGTAATCACACTTGAAAAGC-GCCACAAT-GAAA--ACATTTGGGGGAGGGTTGAGTG 1129
Query 564 GCTTGATGTTGTGCTTACAGTTCCT 588
| |||||| |||||||||||| |||
Sbjct 1130 GTTTGATGCTGTGCTTACAGTCCCT 1154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30391658935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5