BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357142
Length=531
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49270.3 | Symbols: | FUNCTIONS IN: molecular_function unkn... 278 5e-74
AT3G49305.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 119 3e-26
> AT3G49270.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED
DURING: 4 anthesis, C globular stage, petal differentiation
and expansion stage; BEST Arabidopsis thaliana protein
match is: proline-rich family protein (TAIR:AT3G49300.1); Has
61 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria
- 0; Metazoa - 27; Fungi - 0; Plants - 30; Viruses -
0; Other Eukaryotes - 4 (source: NCBI BLink). | chr3:18267398-18268270
REVERSE LENGTH=501
Length=501
Score = 278 bits (150), Expect = 5e-74
Identities = 204/228 (89%), Gaps = 11/228 (5%)
Strand=Plus/Plus
Query 1 ATGAAGCTGGTGGTTCTCATGTCGTTCTTGCTCCTTCTCCCCTTGTGTTCTTCAAGCTTT 60
||| |||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 53 ATGCAGCTGGTGGTTCTCATGTCGTTCTTGCTCCTTCTTCCATTGTGTTCTTCAAGGTTT 112
Query 61 GGAGAGAGCCATGGAGATGGAGCTCCTCACACCGACCAATATTCAGTAAATATGGTTGAA 120
||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 113 GGAGAGAGCCATGAAGATGGAGTTCCTCACACCGACCAATATTCACTAAATATGGTTGAA 172
Query 121 GAGAGTATTCCGAAAATGATGGATAGTCCGGAAACAGGCCCAAACCCAAGCCACGATCAG 180
||||||||||||||||||||||| | | ||||| ||||||||||||||||||||
Sbjct 173 GAGAGTATTCCGAAAATGATGGA-A------A--CAGGCACAAACCCAAGCCACGATCAG 223
Query 181 AGAGTAAACGGTTGGGGTCGTCCTACACGGCCACCGTCA-C-CGGATG 226
| | ||||||||||||||||||||| ||||||||| || | ||||||
Sbjct 224 ACAACAAACGGTTGGGGTCGTCCTACGCGGCCACCGCCATCGCGGATG 271
> AT3G49305.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein match
is: proline-rich family protein (TAIR:AT3G49300.1); Has 18
Blast hits to 18 proteins in 3 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr3:18279750-18280408
REVERSE LENGTH=260
Length=260
Score = 119 bits (64), Expect = 3e-26
Identities = 137/171 (80%), Gaps = 10/171 (6%)
Strand=Plus/Plus
Query 1 ATGAAGCTGGTGGTTCTCATGTCGTTCTTGCTCCTTCTCCCCTTGTGTTCTTCAAGCTTT 60
|||||||||||||||||||||||||||||||| || || || |||||||| || | |||
Sbjct 36 ATGAAGCTGGTGGTTCTCATGTCGTTCTTGCTTCTGCTTCCATTGTGTTCATCGGGATTT 95
Query 61 GGAGAGAGCCATGGAGATGGAGCTCCTCACACCGACCAATATTCAGTAAATA-TGGTTGA 119
|||||| ||||||||| | | ||| ||||| |||||||||| |||| | | ||||
Sbjct 96 GGAGAGGGCCATGGAGTT--A-CTC---ACACCAACCAATATTCCTTAAACAATC-TTGA 148
Query 120 AGAGAGTATTCCGAAAATGATGGAT-AGTCCGGAAACAGGCCCAAACCCAA 169
|||||||| || | || |||||| | ||| ||| ||||||| |||||||
Sbjct 149 GGAGAGTATCCCCACGATCATGGATTA-TCCAGAACCAGGCCCTAACCCAA 198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25418478382
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5