BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357174
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49240.1 | Symbols: APRR4, PRR4 | pseudo-response regulator ... 1011 0.0
> AT5G49240.1 | Symbols: APRR4, PRR4 | pseudo-response regulator
4 | chr5:19962934-19964351 FORWARD LENGTH=879
Length=879
Score = 1011 bits (547), Expect = 0.0
Identities = 738/828 (89%), Gaps = 21/828 (3%)
Strand=Plus/Plus
Query 1 ATGGCTAAGAAATTGGAGCACCGTGGAGTTATGGCTAATGACGACGGTGATGGTCCATTT 60
|||||| ||| |||||| |||||||||| | | | | |||| | |||||||||||||
Sbjct 16 ATGGCTGAGATATTGGATCACCGTGGAG-TCTTG--ACCGACGGTGATGATGGTCCATTT 72
Query 61 AGAGATCCACTACCAAACTTCTCCGATATGTTTCCAAGCAACTTCCCTGAGGGTTTGCGA 120
||| || ||| ||||||||| ||||||||| |||||||||| ||||| |||||||||
Sbjct 73 AGAAAT---CTAACAAACTTCTATGATATGTTTTCAAGCAACTTTCCTGAAGGTTTGCGA 129
Query 121 ATGTTAGTCTTCGATGAAGATTCATCGCATCTTCAGATGTTGGAGACAAATCTCCAAAAG 180
|||||||||||||||||||| ||||| |||||| ||| ||||||| | |||||||||||
Sbjct 130 GTGTTAGTCTTCGATGAAGATCCATCGTATCTTCTGATATTGGAGAGACATCTCCAAAAG 189
Query 181 TTTCAATACCAAGTGACTATATGTAACGAAGAGAACAAAGCTATGTATGCACTCCGTAAC 240
||||||||||||||||||||||| ||||||| ||||||||||||| || ||||||| |||
Sbjct 190 TTTCAATACCAAGTGACTATATGCAACGAAGTGAACAAAGCTATGCATACACTCCGCAAC 249
Query 241 CATAGGAATAGGTTCGACATCGCTATAATACAAGGAAATAATTCAGACGGTGATATGTTC 300
|||||||||||||||||| ||||||| ||||||| ||||||| |||| |||||||| |||
Sbjct 250 CATAGGAATAGGTTCGACCTCGCTATGATACAAGTAAATAATGCAGAAGGTGATATATTC 309
Query 301 CGGTTTCTCTCGGAGATCGGATCGGAAATGGATCTTCCAATCATCATAATATCTGAAGAC 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 CGGTTTCTCTCGGAAATCGGATCGGAAATGGATCTTCCAATCATCATAATATCTGAAGAC 369
Query 361 AAGTCAGTGCAA-TCGGTGATGAAATGGATGATTAACGGTGCTACTGACTATCTTATAAA 419
| |||||| || ||||||| |||||||||||||||||||||| | ||||||||||||||
Sbjct 370 GATTCAGTG-AAGTCGGTGAAGAAATGGATGATTAACGGTGCTGCCGACTATCTTATAAA 428
Query 420 ACCGATAAAACCCGAAGAGCTACGGATAATATTCAAACACTTGGTAAAGAAGGTGCGAGA 479
|||||||| ||||||||| ||||||||| |||||||||| |||||||||||| || ||||
Sbjct 429 ACCGATAAGACCCGAAGATCTACGGATAGTATTCAAACATTTGGTAAAGAAGATGAGAGA 488
Query 480 AAGGAGGAGTGTGGTGACCGGAGAAGCTGAAGAGAAAGCAGGAGGTGAGAAATCATCCTC 539
||||||||||||||||||||||| || | ||||||||||| ||||||||||||||||||
Sbjct 489 AAGGAGGAGTGTGGTGACCGGAG-AG--GCAGAGAAAGCAGCAGGTGAGAAATCATCCTC 545
Query 540 TGTGGGAGATTCCACCATAAGAAACCCTAACAAGAGAAAAAGAAGTATG-TGCCTTGATG 598
||| |||||||||||||||||||||||||||||||| |||||||||| | |||||||| |
Sbjct 546 TGTCGGAGATTCCACCATAAGAAACCCTAACAAGAGTAAAAGAAGTA-GTTGCCTTGAAG 604
Query 599 CAGAAGTCAACGAGGAGGATCGTCATGATCATAATGATCGTGCTTGTGCTGCTAGCT-CT 657
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 605 CAGAAGTCAACGAGGAGGATCGTCATGATCATAATGATCGTGCTTGTGCTTCTAG-TGCC 663
Query 658 AAGAAAAGACGAGTCGTGTGG-ACCAAGGAGCTTCACAAAAAGTTTGTCGACGCCGTGGA 716
||||||||||||||||| ||| || | |||||||||| |||| ||| || ||||||||||
Sbjct 664 AAGAAAAGACGAGTCGTTTGGGACGA-GGAGCTTCACCAAAACTTTCTCAACGCCGTGGA 722
Query 717 ATATCTTGGACTCGATAA-AGCTGTTCCCAAGAAAATTTTAGA-GCTTATGAATGTTGAA 774
| |||||||||||| || |||||||||||| ||||| ||||| | ||||||| |||||
Sbjct 723 TTTTCTTGGACTCGA-AAGAGCTGTTCCCAAAAAAATATTAGATG-TTATGAAGGTTGAT 780
Query 775 AACCTCAGTCGAGAAAACGTAGCCAGCCATCTTCAGGTAACGTTTCTT 822
|| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 TACATCAGTCGAGAAAACGTAGCCAGTCATCTTCAGGTAACGTTTCTT 828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41091532246
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5