BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg357174 Length=843 Score E Sequences producing significant alignments: (Bits) Value AT5G49240.1 | Symbols: APRR4, PRR4 | pseudo-response regulator ... 1011 0.0 > AT5G49240.1 | Symbols: APRR4, PRR4 | pseudo-response regulator 4 | chr5:19962934-19964351 FORWARD LENGTH=879 Length=879 Score = 1011 bits (547), Expect = 0.0 Identities = 738/828 (89%), Gaps = 21/828 (3%) Strand=Plus/Plus Query 1 ATGGCTAAGAAATTGGAGCACCGTGGAGTTATGGCTAATGACGACGGTGATGGTCCATTT 60 |||||| ||| |||||| |||||||||| | | | | |||| | ||||||||||||| Sbjct 16 ATGGCTGAGATATTGGATCACCGTGGAG-TCTTG--ACCGACGGTGATGATGGTCCATTT 72 Query 61 AGAGATCCACTACCAAACTTCTCCGATATGTTTCCAAGCAACTTCCCTGAGGGTTTGCGA 120 ||| || ||| ||||||||| ||||||||| |||||||||| ||||| ||||||||| Sbjct 73 AGAAAT---CTAACAAACTTCTATGATATGTTTTCAAGCAACTTTCCTGAAGGTTTGCGA 129 Query 121 ATGTTAGTCTTCGATGAAGATTCATCGCATCTTCAGATGTTGGAGACAAATCTCCAAAAG 180 |||||||||||||||||||| ||||| |||||| ||| ||||||| | ||||||||||| Sbjct 130 GTGTTAGTCTTCGATGAAGATCCATCGTATCTTCTGATATTGGAGAGACATCTCCAAAAG 189 Query 181 TTTCAATACCAAGTGACTATATGTAACGAAGAGAACAAAGCTATGTATGCACTCCGTAAC 240 ||||||||||||||||||||||| ||||||| ||||||||||||| || ||||||| ||| Sbjct 190 TTTCAATACCAAGTGACTATATGCAACGAAGTGAACAAAGCTATGCATACACTCCGCAAC 249 Query 241 CATAGGAATAGGTTCGACATCGCTATAATACAAGGAAATAATTCAGACGGTGATATGTTC 300 |||||||||||||||||| ||||||| ||||||| ||||||| |||| |||||||| ||| Sbjct 250 CATAGGAATAGGTTCGACCTCGCTATGATACAAGTAAATAATGCAGAAGGTGATATATTC 309 Query 301 CGGTTTCTCTCGGAGATCGGATCGGAAATGGATCTTCCAATCATCATAATATCTGAAGAC 360 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 310 CGGTTTCTCTCGGAAATCGGATCGGAAATGGATCTTCCAATCATCATAATATCTGAAGAC 369 Query 361 AAGTCAGTGCAA-TCGGTGATGAAATGGATGATTAACGGTGCTACTGACTATCTTATAAA 419 | |||||| || ||||||| |||||||||||||||||||||| | |||||||||||||| Sbjct 370 GATTCAGTG-AAGTCGGTGAAGAAATGGATGATTAACGGTGCTGCCGACTATCTTATAAA 428 Query 420 ACCGATAAAACCCGAAGAGCTACGGATAATATTCAAACACTTGGTAAAGAAGGTGCGAGA 479 |||||||| ||||||||| ||||||||| |||||||||| |||||||||||| || |||| Sbjct 429 ACCGATAAGACCCGAAGATCTACGGATAGTATTCAAACATTTGGTAAAGAAGATGAGAGA 488 Query 480 AAGGAGGAGTGTGGTGACCGGAGAAGCTGAAGAGAAAGCAGGAGGTGAGAAATCATCCTC 539 ||||||||||||||||||||||| || | ||||||||||| |||||||||||||||||| Sbjct 489 AAGGAGGAGTGTGGTGACCGGAG-AG--GCAGAGAAAGCAGCAGGTGAGAAATCATCCTC 545 Query 540 TGTGGGAGATTCCACCATAAGAAACCCTAACAAGAGAAAAAGAAGTATG-TGCCTTGATG 598 ||| |||||||||||||||||||||||||||||||| |||||||||| | |||||||| | Sbjct 546 TGTCGGAGATTCCACCATAAGAAACCCTAACAAGAGTAAAAGAAGTA-GTTGCCTTGAAG 604 Query 599 CAGAAGTCAACGAGGAGGATCGTCATGATCATAATGATCGTGCTTGTGCTGCTAGCT-CT 657 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | Sbjct 605 CAGAAGTCAACGAGGAGGATCGTCATGATCATAATGATCGTGCTTGTGCTTCTAG-TGCC 663 Query 658 AAGAAAAGACGAGTCGTGTGG-ACCAAGGAGCTTCACAAAAAGTTTGTCGACGCCGTGGA 716 ||||||||||||||||| ||| || | |||||||||| |||| ||| || |||||||||| Sbjct 664 AAGAAAAGACGAGTCGTTTGGGACGA-GGAGCTTCACCAAAACTTTCTCAACGCCGTGGA 722 Query 717 ATATCTTGGACTCGATAA-AGCTGTTCCCAAGAAAATTTTAGA-GCTTATGAATGTTGAA 774 | |||||||||||| || |||||||||||| ||||| ||||| | ||||||| ||||| Sbjct 723 TTTTCTTGGACTCGA-AAGAGCTGTTCCCAAAAAAATATTAGATG-TTATGAAGGTTGAT 780 Query 775 AACCTCAGTCGAGAAAACGTAGCCAGCCATCTTCAGGTAACGTTTCTT 822 || |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 781 TACATCAGTCGAGAAAACGTAGCCAGTCATCTTCAGGTAACGTTTCTT 828 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41091532246 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5