BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357183
Length=2298
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49390.1 | Symbols: | LOCATED IN: endomembrane system; EXPR... 1387 0.0
AT5G49380.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein o... 647 0.0
AT5G49370.1 | Symbols: | Pleckstrin homology (PH) domain super... 433 4e-120
> AT5G49390.1 | Symbols: | LOCATED IN: endomembrane system; EXPRESSED
IN: 17 plant structures; EXPRESSED DURING: 11 growth
stages; BEST Arabidopsis thaliana protein match is: binding
(TAIR:AT3G06670.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink). | chr5:20027340-20030361 FORWARD
LENGTH=1824
Length=1824
Score = 1387 bits (751), Expect = 0.0
Identities = 1016/1139 (89%), Gaps = 37/1139 (3%)
Strand=Plus/Plus
Query 1013 AGGTGCACTTCTTGCACGAATTTTGTAGTTTATGCA--AGAGCACGAAGAAGGTATCGGT 1070
||||| ||||||||| |||||||||||||||||||| | || | |||||| ||||| ||
Sbjct 13 AGGTGTACTTCTTGCTCGAATTTTGTAGTTTATGCACGAAAG-A-GAAGAATGTATCAGT 70
Query 1071 CTTGAGGGAACTTATCAGTGAT-GGTCTTTTTGACATCATTGCAGAAATCTTGAAGAGTC 1129
|||||||||||||||||| | | |||||||||||||||||||||||| |||||| ||||
Sbjct 71 CTTGAGGGAACTTATCAGAG-TCGGTCTTTTTGACATCATTGCAGAAGTCTTGATGAGTT 129
Query 1130 CAGATAAGAAACTCATATTAATGGGGGCCGAAATTCTTAGTATTGTGTTGGCTCAAGATT 1189
|||||||||||||| ||||||||||||| |||| |||||| || |||||||||||||||
Sbjct 130 CAGATAAGAAACTCGTATTAATGGGGGCAAAAATCCTTAGTGTTTTGTTGGCTCAAGATT 189
Query 1190 CTCTTATGCTCTTATGCTCTTATGTTGTTCGACCGGAAACTCCCCTCCTTGGTCTCTTGG 1249
| | || | |||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 190 C-C--ATCCGCTTATGCTCTTATGTTGTTCGACCAGAAACTTACCTCCTTGGTCTCTTGG 246
Query 1250 TTAAGAGAATGATGGAAGATTTTGGTGATAAGATGGAATCGCTGTTTGTGGACATTATTC 1309
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 247 TTAAGGGAATGATGGAAGATTTTGGTGATGAGATGGAATCGCTGTTTGTGGACATTATTC 306
Query 1310 AAAATGTATTGGAATTTCGTGGAGCTCAAAATGTACAATTCTCTGATAAGCAGAAGAAGA 1369
|||||||||||| || | ||||||||| | | ||||||||||| ||| ||| |
Sbjct 307 AAAATGTATTGGGATGTGGTGGAGCTC---A-G-----GTCTCTGATAAGAAGACGAATA 357
Query 1370 TGCAAGGGATGATTTTGGATACTTTCTGTGAGAAGCATCTACCTGAATTAGTTGATTTAA 1429
||||| |||| |||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 358 TGCAAAGGATCATTTGGGATATTTTCTGTGAGAAGCATCTACCTGAATTAGTTGATTTCA 417
Query 1430 TAATGGCCTCATGTCCTGAAAGACCTGGCGATACATCTGAAGGTGCATTCGTAAGAGTTG 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TAATGGCCTCATGTCCTGAAAGACCTGGCGATACATCTGAAGGTGCATTCGTAAGAGTTG 477
Query 1490 GCAGCCATCGTGGGGCAAAGCCGG-AAGTCCTATTGCACATTTGTCAATTGCTGTGCTCT 1548
||||||||||||| ||||||||| || ||||||||| ||||||| ||||||||||||||
Sbjct 478 GCAGCCATCGTGGAACAAAGCCGGGAA-TCCTATTGCGCATTTGTGAATTGCTGTGCTCT 536
Query 1549 TGCGTTCAACTGGATCCATTCAGGACAAATTTTCTCCATAACAATTTGACAGAAAAGGTT 1608
|||||||| |||||||||| ||||||||||||||||||||||| | ||| ||||||||||
Sbjct 537 TGCGTTCAGCTGGATCCATCCAGGACAAATTTTCTCCATAACAGTGTGATAGAAAAGGTT 596
Query 1609 TTGCTTCTTACACGAAGAAAGGAAAAACCCCTAGTGGCTGCGGCTGTTCGATTTGTCCGC 1668
|||||||| || ||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 597 TTGCTTCTCACTCGAAGAAAGGAAAAAACCCTAGTGGCTGCAGCTGTTCGATTTGTCCGC 656
Query 1669 ACTCTCCTCTCTGTCCATGATGATAATGTCCAGAGTTACATTGTTGAGAACAACACGCTG 1728
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ACTCTCCTCTCTGTCCATAATGATAATGTCCAGAGTTACATTGTTGAGAACAACACGCTG 716
Query 1729 AAACCGATTATAGATGTTTTTGTTGCTGATGGTCACCAGGACAACCTCCTGACTTCTGCT 1788
||||||||||| || |||||||||||| || |||| | ||||||||| ||||| |||||
Sbjct 717 AAACCGATTATCGAAGTTTTTGTTGCTAATCGTCATCGGGACAACCTGATGACTGCTGCT 776
Query 1789 GTCTTGGAGCTTCTTGAGCACATACGCAAGAAAAATGCAGTGTTGGTCAAATACGTAGTT 1848
|| ||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 777 GTGTTGGAGCTTCTTGAGCACATACGCAAGGAATATGCAGTGTTGGTCAAATACGTAGGT 836
Query 1849 GATACATTTTGGGACCAGTTAGCTCCATTTGAGCACCTGCCTTCCCTCCAGGATTTCAAA 1908
|||||||||||||||||| |||||||||||||| |||||| |||| || ||||||| |||
Sbjct 837 GATACATTTTGGGACCAGCTAGCTCCATTTGAGAACCTGCGTTCCATCAAGGATTTGAAA 896
Query 1909 ACAAAATATGAGAAGTGCTTAGAAAGGAAGGGACCAAAGAGCACCACTGATGATCAATCT 1968
|| |||||||||||| | || ||||||||||||||||||||| |||||
Sbjct 897 ACGAAATATGAGAAG-G----GA----------CCAAAGAGCACCACTGATGATGAATCT 941
Query 1969 GATATGAGACAAGATGGGCGTGCTCTGGATGAAGAAAAGTCACCTTCTGCTTCCTGT-CA 2027
||||||||||||||||||||||||||||||||| ||||| || ||||||||||| || ||
Sbjct 942 GATATGAGACAAGATGGGCGTGCTCTGGATGAAAAAAAGCCAGCTTCTGCTTCCAGTACA 1001
Query 2028 ACAGATGGAAGAAGCTGAGCCCCATAATTCCGATGTCGCAGCTGCAAGCTCTACTCCTAG 2087
||||||||||||||||| |||||||||||| ||| | |||||||||| ||| || ||||
Sbjct 1002 -CAGATGGAAGAAGCTGATCCCCATAATTCCAATGCCACAGCTGCAAGTTCTGCTTCTAG 1060
Query 2088 TACACAGATGGAAGAAGATGAGCCCTATAATCCCGATGTCCCAGCTGCAAGTTCTGCTT 2146
|||||||||||||| | ||||||||||||||| |||||| |||||||||||||| |||
Sbjct 1061 CACACAGATGGAAGATGCTGAGCCCTATAATCCTGATGTCACAGCTGCAAGTTCTACTT 1119
Score = 385 bits (208), Expect = 1e-105
Identities = 263/289 (91%), Gaps = 6/289 (2%)
Strand=Plus/Plus
Query 2013 TTCTGCTTCCTGTCA-ACAGATGGAAGAAGCTGAGCCCCATAATTCC-GATGTCGCAGCT 2070
|||| ||| || ||| || |||||||| |||||||||| |||| ||| |||||| |||||
Sbjct 1238 TTCTACTT-CTATCACACCGATGGAAGTAGCTGAGCCCTATAA-TCCTGATGTCACAGCT 1295
Query 2071 GCAAGCTCTACTCCTAGT-ACACAGATGGAAGAAGATGAGCCCTATAATCCCGATGTCCC 2129
||||| |||||| ||| | |||| |||||||| || ||||||||||||||| | |||| |
Sbjct 1296 GCAAGTTCTACTTCTA-TCACACCGATGGAAGTAGCTGAGCCCTATAATCCTGGTGTCAC 1354
Query 2130 AGCTGCAAGTTCTGCTTCTCCGAGCAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGA 2189
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 AGCTGCAAGTTCTGTTTCTCCGAGCAAGAGGTCTGGAGGTTTGGTTGATTATGAGGATGA 1414
Query 2190 CGAAGATGAGCAAGAGAAGCGTAAAAGACAGAAGCTCAGTTCAACAAGTGAAGGAAACAA 2249
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1415 CGAAGATGAGCTAGAGAAGAGTAAAAGACAGAAGCTCAGTTCAACAAGTGAAGGAAATAA 1474
Query 2250 GAACTCCCCAGAACAAGGTGGCGAAGCTAAGGAACCTGGAGAACTCTAA 2298
|||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1475 GAACACCCCAGAACAAGGTGGTGAAGCTAAGGAACCTGGAGAACTCTAA 1523
> AT5G49380.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein
of unknown function DUF625 (InterPro:IPR006887); BEST Arabidopsis
thaliana protein match is: binding (TAIR:AT3G06670.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:20025565-20027078 FORWARD LENGTH=657
Length=657
Score = 647 bits (350), Expect = 0.0
Identities = 484/548 (88%), Gaps = 11/548 (2%)
Strand=Plus/Plus
Query 428 AGGTTGTTACTGAAAATTGCATCACAGATCAGATGCGACTAACCGAACTTATTCTGAAGG 487
|||||||| |||| || ||| |||||||||||||||| ||||||||||||| ||||||
Sbjct 26 AGGTTGTTGCTGACTATGGCAACACAGATCAGATGCGATTAACCGAACTTATGCTGAAGA 85
Query 488 ATGCTACTTTCTTTCAGAAATTGATGGATGTATTTGATTCA-TGTGATAA-CGTGAAAGA 545
||| | ||||||||||||||||||| ||||||||||| | | ||||| || || ||||||
Sbjct 86 ATGGTGCTTTCTTTCAGAAATTGATCGATGTATTTGA-TGACTGTGAGAATCG-GAAAGA 143
Query 546 TGTTGCTGACCTTCACATGATATTCAAAATTGTCAAAGGAATCATTTCGCTCAACAGTTC 605
| ||| || |||||| ||||| ||||| |||||||||| |||||||||| |||||| ||
Sbjct 144 TATTGATGGCCTTCATATGATGTTCAATATTGTCAAAGAAATCATTTCGGTCAACAATTA 203
Query 606 TCAGATCCTGGAGATTAT-TGTAGGGGATCAACTGTTCATGAAAATTATCGGGTGCCTTG 664
|||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||
Sbjct 204 TCAGATCCTGGAGATTATCT-TAGGGGATCAACTGTTCATGAAAATTTTCGGGTGCCTTG 262
Query 665 AGTATGATCCCGATGTTCCCCAGTCTCAACATCAACAGAC-TATGCTGAGGGAGCATGCT 723
|||||||||||||||||||||| ||| || |||| | ||| | | ||||| || ||| |
Sbjct 263 AGTATGATCCCGATGTTCCCCAATCTAAAGATCACCGGACTTCT-CTGAGAAAGAATGTT 321
Query 724 GTTTTTAAGGAGGCTATACCAATTAAGAATGCCCTGGTTCTGTCGAAGATACACCAAACA 783
|||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 322 GTTTTTGTGGAGGATATACCAATTAAGAATCCCCTGGTTCTGTCGAAGATACACCAAACA 381
Query 784 TACAGAATTGGTTTTCTGAAGGA---TGTTTTGACGAATGTAGTAGATGCTGCTACAACC 840
|||||||||| |||||||||||| |||||||||| ||||| |||||| ||||||| ||
Sbjct 382 TACAGAATTGATTTTCTGAAGGATGTTGTTTTGACGGATGTACTAGATGTTGCTACATCC 441
Query 841 ACAAACCTAGATTCAGTAATCGATGCAAACAATGCTACTATTGTTACACTGCTGAAGGAT 900
|| |||||||||||||||| |||||||||| |||||| || ||||||| |||||||||
Sbjct 442 GCATTCCTAGATTCAGTAATCAATGCAAACAAAGCTACTGTTCTTACACTACTGAAGGAT 501
Query 901 GACATCCAAGAGTTATTTGCACGGTTACGGTCACCTTCTACATCTGACGAATCAAGGAAT 960
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 502 GACATCCAAGAGTCATTTGCAAGGTTACGGTCACCTTCTACATCTGACGAATCAAGGAAT 561
Query 961 AATTTGGT 968
||||||||
Sbjct 562 AATTTGGT 569
> AT5G49370.1 | Symbols: | Pleckstrin homology (PH) domain superfamily
protein | chr5:20023456-20024530 FORWARD LENGTH=561
Length=561
Score = 433 bits (234), Expect = 4e-120
Identities = 280/302 (93%), Gaps = 4/302 (1%)
Strand=Plus/Plus
Query 1 ATGGCCACTCGGAGAAACACCAATTCAATGCAGAGAGTGAAGGTTTATCGTTTGAATGAA 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 ATGGCCACTCGGGGAAACACCAATTCAATGCAGAGAGTGAAGGTTTATCGTTTGAATGAA 318
Query 61 GATGGTCAATGGGATGATCGAGGAACTGGACACGTTACTATGGATTATATGGAGCGATCG 120
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 319 GATGGTCAATGGGATGATAAAGGAACTGGACACATTACTATGGATTATATGGAGCGATCG 378
Query 121 GGAG-ATTTCGGTCTTTATGTAATTGATGAAGATGATAATTCGACATTGCTTGTACACAA 179
| || ||| | |||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 379 GAAGTATT-CAATCTTTATGTAATTGATGAAGATGATAATGCGACATTGCTTGCACACCG 437
Query 180 CATCAGC-TCTGAGAATATCTACAAGCAGCAAGAAGACTCAATTATCTCATGGAGTGAAC 238
||||||| | ||| |||||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct 438 CATCAGCAT-TGATAATATCTACAAGCAGCAAGACGACTCAATTATCTCATGGATTGACC 496
Query 239 CAAAACACTCAGCACAATTGGCTTTGAGCTTTCAAGAGACTGCGGGATGCACGTTCGTAT 298
|| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 497 CACAACACTCAGCACAATTGGCTTTGAGCTTTCAAGAGACTGCAGGATGCACGATCGTAT 556
Query 299 GG 300
||
Sbjct 557 GG 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114055638240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5