BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg357185

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G49410.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   660    0.0  


> AT5G49410.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G73940.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:20032463-20034001 FORWARD LENGTH=975
Length=975

 Score =  660 bits (357),  Expect = 0.0
 Identities = 412/438 (94%), Gaps = 6/438 (1%)
 Strand=Plus/Plus

Query  1    ATGTTGCGTAACATGATGATGCCTTGGAACAGAAGCAATCACAATGTAGTTGGAATGTTA  60
            ||||| || ||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct  288  ATGTTACGGAACATGATGATGCCTTGGAACAGTAGCGATCACAATGTAGTTGGAATGTTA  347

Query  61   ACAAGGCATTTTGCCACGAAACCGAAACCCAAGATGAAACCAATCGAGTTGAACACACCA  120
            ||||||||||| ||||| ||||| ||||||||||||||||| || ||| |||||||||||
Sbjct  348  ACAAGGCATTTCGCCACAAAACCAAAACCCAAGATGAAACCGATTGAGCTGAACACACCA  407

Query  121  CCGGAGCAAACACAGACGATCACTCGAGTGATCTTTGATATTTTGAAGGATCATGGACCT  180
            ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct  408  CCGGAGCAAACTCAGACGATAACCCGAGTGATCTTTGATATTTTGAAGGATCATGGACCT  467

Query  181  CTTACCATTGCTGAAACTTGGGATCGTGTCAAGGAAGTGGGATTAAGAGGGCTAACGAGC  240
            || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  468  CTAACCATTGCTGAAACTTGGGATCGTGTCAAGGAAGTGGGATTAAGAGGGCTGACGAGC  527

Query  241  AAGCGTCACATGAAGATTATACTAAGATGGATGAGAGAGAGACAGAAGCTGAAGCTGATA  300
            ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct  528  AAGCGTCACATGAAGATAATACTAAGGTGGATGAGAGAGAGACAGAAGCTGAAGCTGATA  587

Query  301  TGTAACCATGTTGGTCCTCACAAGCAATTCTTGTACACTACTTGGTTCACTAAACACAAC  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  588  TGTAACCATGTTGGTCCTCACAAGCAATTCTTGTACACTACTTGGTTCACTAAACACAAC  647

Query  361  CCTTCTTCTAAATTCCCTAAGT--C-ACCGGAAAATCTCACAGGAAAATCCTCTAGCCAC  417
            ||||||||||||||||| ||||  | |||||||||||||||||||||||||||| |||||
Sbjct  648  CCTTCTTCTAAATTCCCCAAGTTACCACCGGAAAATCTCACAGGAAAATCCTCTGGCCAC  707

Query  418  CCT---AAACTGCCCTGA  432
            |||   ||||| ||||||
Sbjct  708  CCTCCTAAACTTCCCTGA  725



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20509241592


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5