BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357219
Length=1548
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49690.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 1910 0.0
AT5G27650.1 | Symbols: | Tudor/PWWP/MBT superfamily protein | ... 255 7e-67
> AT5G49690.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr5:20189655-20191390 REVERSE LENGTH=1736
Length=1736
Score = 1910 bits (1034), Expect = 0.0
Identities = 1256/1363 (92%), Gaps = 15/1363 (1%)
Strand=Plus/Plus
Query 1 ATGGACGACAAGAAAGAAGAAGTTATGCACATAGCCATGTTTCCATGGCTAGCTATGGGT 60
|||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 41 ATGGTCGACAAGAGAGAAGAAGTTATGCACGTAGCCATGTTTCCATGGCTAGCTATGGGT 100
Query 61 CATCTCCTTCCTTTTCTTCGTCTATCCAAGTTACTAGCTCAAAAGGGTCACAAAATCTCT 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 101 CATCTCCTTCCTTTTCTTCGTCTCTCCAAGTTACTAGCTCAAAAGGGTCACAAGATCTCT 160
Query 121 TTCATATCTACACCACGAAACATCCAAAGACTTCCCAAATTACCATCAAACCTCTCCTCC 180
|||||||| |||||| |||||||| |||||||||| ||||||| |||||||||| |||||
Sbjct 161 TTCATATCAACACCAAGAAACATCGAAAGACTTCCTAAATTACAATCAAACCTCGCCTCC 220
Query 181 TCAATTACCTTCGTCTCTTTCCCTCTCCCTTCCATCTCTGGCTTGCCTCCTTCTTCAGAA 240
|| || |||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 221 TCCATCACCTTCGTCTCTTTCCCTCTCCCTCCCATCTCAGGCTTGCCTCCTTCTTCAGAA 280
Query 241 TCCTCCATGGACGTACCTTACAACAAGCAACAGTCTCTTAAAGCCGCTTTCGATCTTCTT 300
|| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 281 TCATCCATGGACGTTCCTTACAACAAGCAACAGTCTCTTAAAGCCGCTTTTGATCTTCTT 340
Query 301 CAGCCACCGTTGACGGAATTTCTCCGACTGTCGTCTCCGGATTGGATCATATATGACTAC 360
||||||||||||| || |||||||||| ||| |||||||||||||||||||| |||||
Sbjct 341 CAGCCACCGTTGAAAGAGTTTCTCCGACGGTCTTCTCCGGATTGGATCATATACGACTAT 400
Query 361 GCTTCTCACTGGCTTCCATCTATTGCAAAGGAGCTTGGAATCTCGAAAGCTTTCTTGAGT 420
||||||||||||||||| |||||||| |||||||||||||| || |||||||| |||
Sbjct 401 GCTTCTCACTGGCTTCCTTCTATTGCGGCCGAGCTTGGAATCTCTAAGGCTTTCTTTAGT 460
Query 421 CTCTTTAACGCAGCTACTCTCTGTTTTATGGGACCGTCTTCGTCGTTGATTG-AGGAATC 479
|||||||||||||||||||||||||| ||||||||||||||||| ||||||| || |||
Sbjct 461 CTCTTTAACGCAGCTACTCTCTGTTTCATGGGACCGTCTTCGTCTTTGATTGAAGAAAT- 519
Query 480 TAGATCAACGCCGGAAGATTTCACGGTGGTGCCACCGTGGGTTCCGTTTAAGTCAACCAT 539
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||
Sbjct 520 TAGATCAACGCCGGAAGATTTCACGGTGGTGCCACCGTGGGTCCCGTTCAAGTCAAACAT 579
Query 540 CGTGTTTCGTTATCATGAAGTCAGTAGATACGTTGAGAAGACAGATGAAGATGTAACCGG 599
||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||
Sbjct 580 CGTGTTTCGTTATCATGAAGTTACTAGATACGTTGAGAAGACAGAGGAAGATGTAACCGG 639
Query 600 AGTCTCTGACTCTGTCCGGTTTGGTTACACGATTGACGGGAGTGATGCGGTTTTTGTCCG 659
|||||||||||| || |||||||||||| ||||||||| || |||||||||||||||||
Sbjct 640 AGTCTCTGACTCAGTTCGGTTTGGTTACTCGATTGACGAAAGCGATGCGGTTTTTGTCCG 699
Query 660 TAGTTGTCCCGAGTTTGAACCGGAATGGTTTAGTTTACTACAAGATTTGTACCGTAAACC 719
||| ||||| ||||||||||||||||||||| |||||||| |||| |||||||||||||
Sbjct 700 TAGCTGTCCGGAGTTTGAACCGGAATGGTTTGGTTTACTAAAAGACCTGTACCGTAAACC 759
Query 720 GGTTTTTCCAATCGGGTTTCTT-CCTCCCGTTATTGAAGATGACGA---CGATGATACTA 775
||| ||||||||||||||| || ||||| ||||||||||| ||||| || ||||||||
Sbjct 760 GGTATTTCCAATCGGGTTT-TTGCCTCCGGTTATTGAAGACGACGATGCCGTTGATACTA 818
Query 776 CATGGGTTCGTATAAAGGAGTGGCTCGACAAGCAACGAG-TTAACTCAGTGGTTTACGTG 834
||||||||||||||||| ||||||||||||||||||| | |||| ||||| |||||||||
Sbjct 819 CATGGGTTCGTATAAAGAAGTGGCTCGACAAGCAACG-GCTTAATTCAGTTGTTTACGTG 877
Query 835 TCACTTGGCACCGAAGCGAGTCTTCGTCGTGAGGAACTCACCGAGCTAGCTCTTGGGTTG 894
|||||||||||||||||||||||||||| ||||||| | || |||||||||||||||||
Sbjct 878 TCACTTGGCACCGAAGCGAGTCTTCGTCATGAGGAAGTAACTGAGCTAGCTCTTGGGTTA 937
Query 895 GAGAAGTCAGAGACGCCTTTCTTTTGGGTTCTAAGGAACGAGCCACAGATTCCAGACGGG 954
|||||||||||||| || ||||||||||| ||||||||||||||| |||||||||| |||
Sbjct 938 GAGAAGTCAGAGACACCGTTCTTTTGGGTCCTAAGGAACGAGCCAAAGATTCCAGATGGG 997
Query 955 TTCGAGGAA-A-GAGTCAAGGGACGTGGCATGGTTCATGTTGGTTGGGTTCCACAAGTGA 1012
||| | || | |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 998 TTC-A-AAACACGAGTCAAGGGACGTGGAATGGTTCATGTTGGTTGGGTTCCACAAGTGA 1055
Query 1013 AAATACTTAGTCACGAGTCAGTGGGAGGGTTCTTGACACATTGTGGTTGGAACTCAGTGG 1072
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1056 AAATACTTAGTCACGAGTCAGTAGGAGGGTTCTTGACACATTGTGGTTGGAACTCAGTGG 1115
Query 1073 TGGAAGGGTTAGGGTTTGGTAAAGTTCCGATCTTTTTGCCGGTGTTGAATGAGCAAGGAC 1132
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1116 TGGAAGGGTTAGGGTTTGGTAAAGTTCCAATCTTTTTTCCGGTGTTGAATGAGCAAGGAC 1175
Query 1133 TTAACACGAGGTTGTTGCAAGGGAAAGGACTTGGTGTTGAGGTTTTAAGAGATGAGAGAG 1192
|||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1176 TTAATACGAGGTTGTTGCATGGGAAAGGACTTGGTGTTGAGGTTTCAAGAGATGAGAGAG 1235
Query 1193 ATGGATCATTTGGTTCTGAATCGGTCGCTGACTCGGTTAGATTGGTGATGATTGATGATG 1252
|||| || |||| |||||| ||||||||||||||| |||| |||||||||||||||||||
Sbjct 1236 ATGGGTCGTTTGATTCTGACTCGGTCGCTGACTCGATTAGGTTGGTGATGATTGATGATG 1295
Query 1253 CTGGCGAGGAGATAAGGGAAAAGGC-AAAGGTGATGAAGGGTTTGTTTGGAAACATGGAT 1311
|||||||||||||||||| ||||| |||| ||||||||| ||||||||| |||||||||
Sbjct 1296 CTGGCGAGGAGATAAGGGCTAAGGCTAAAG-TGATGAAGGATTTGTTTGGGAACATGGAT 1354
Query 1312 AAGAATATTCGTTATGTTGATGAACTTGTTGGGTTTATGAGAA 1354
||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1355 GAGAATATTCGTTATGTTGACGAACTTGTTAGGTTTATGAGAA 1397
> AT5G27650.1 | Symbols: | Tudor/PWWP/MBT superfamily protein
| chr5:9785407-9789232 FORWARD LENGTH=3461
Length=3461
Score = 255 bits (138), Expect = 7e-67
Identities = 176/194 (91%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 1355 ATGATGATAGTTCTGAGCTTAaagaagaagaagaagaagaTGATTGCTCCGATGATCAAT 1414
||||||| ||||||||| |||||||||||||||||||||| ||| |||| ||||||||||
Sbjct 394 ATGATGAGAGTTCTGAGGTTAAAGAAGAAGAAGAAGAAGAAGATGGCTCTGATGATCAAT 453
Query 1415 CTAGTGAGCTTGGTTCTGAAGCTGATGAGAAGGAATT-GAATTTAGATTTGAAGGAAGAG 1473
||||||||||||||||||||||||||||||||||||| || ||| | |||||||||||||
Sbjct 454 CTAGTGAGCTTGGTTCTGAAGCTGATGAGAAGGAATTAGA-TTTGGGTTTGAAGGAAGAG 512
Query 1474 AAACGAAGAA-TATCTGTTTACAAATCTCTTTTATCTGAGTTTGATGATTATGTTGCGAG 1532
||| ||| | | || | ||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 513 AAAA-AAGGAGTTTCGGATTATAAATCTCTTTTATCTGAGTTTGATGATTATGTTGCAAG 571
Query 1533 TGAGAAAATGGGTT 1546
||||||||||||||
Sbjct 572 TGAGAAAATGGGTT 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76405229490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5