BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357249
Length=471
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26240.1 | Symbols: CLC-D, ATCLC-D | chloride channel D | ch... 407 5e-113
> AT5G26240.1 | Symbols: CLC-D, ATCLC-D | chloride channel D |
chr5:9189524-9194731 FORWARD LENGTH=2861
Length=2861
Score = 407 bits (220), Expect = 5e-113
Identities = 252/268 (94%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 91 AATGGATTTGATATTCCAGGAACCTTTCTCTTTAGAACTCTCATCGGAAAGATATTTGGA 150
|||||| |||||||||| || ||||| ||||||||||||||||| |||||||||||||||
Sbjct 573 AATGGAATTGATATTCCCGGCACCTTGCTCTTTAGAACTCTCATTGGAAAGATATTTGGA 632
Query 151 AGCATAGGTTCTGTTGGGGGTGGCTTAGCCTTGGGGAAAGAAGGTCCCCTTGTACATACA 210
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 633 AGCATTGGTTCTGTTGGGGGTGGCTTAGCCTTGGGGAAAGAAGGTCCTCTTGTGCATACA 692
Query 211 GGTGCCTACATTGCATCGTTGCTTGGTCAGGGTGGATCTACAAAATATCATTTGAATTCT 270
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 693 GGTGCCTGCATTGCATCGTTGCTTGGTCAGGGTGGATCTACGAAATATCATTTGAATTCT 752
Query 271 AGGTGGCAGCAATTTTTTAAGAGTGATAGAGATCGTCGTGATCTTGTCACTTGTGGATGT 330
|| |||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 753 AGATGGCCGCAACTTTTTAAGAGTGATAGAGATCGGCGTGATCTTGTCACTTGTGGATGT 812
Query 331 GCAGCTGGAGTTGCTGCCGCTTTTAGAG 358
||||||||||||||||| || |||||||
Sbjct 813 GCAGCTGGAGTTGCTGCTGCCTTTAGAG 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22404429562
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5