BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg357318 Length=366 Score E Sequences producing significant alignments: (Bits) Value AT5G50650.1 | Symbols: | Transducin/WD40 repeat-like superfami... 255 2e-67 AT5G50550.1 | Symbols: | Transducin/WD40 repeat-like superfami... 255 2e-67 > AT5G50650.1 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:20610212-20612255 FORWARD LENGTH=1346 Length=1346 Score = 255 bits (138), Expect = 2e-67 Identities = 164/176 (93%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 178 TGTGGTT-GCACTGATCTACCTTATCGTATGGCTGTTCATCCTCGTCAAGATGGTCTTAT 236 |||| || |||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 264 TGTGATTGGCACTGATCTACCTTATCGTATGGCTATTCATCCTCGTCAAGGTGGTCTTAT 323 Query 237 TTGCGCATTGCCTAACAGTTGCAGACTGTTTGATTGGGATCACATTACAGAGGTTGATAA 296 ||| ||||||||||||||||||||||||||||||||||| |||||| ||||| |||||| Sbjct 324 TTGTGCATTGCCTAACAGTTGCAGACTGTTTGATTGGGAAAACATTATAGAGGATGATAA 383 Query 297 TGAGGAAGAGTCAGAGAAAG-TGATTAAAGAGTTAAAAGATGTTGGACAACAATTG 351 |||||||||||||||||||| || |||||||||||||||||||||||||||| ||| Sbjct 384 TGAGGAAGAGTCAGAGAAAGTTG-TTAAAGAGTTAAAAGATGTTGGACAACAGTTG 438 Score = 195 bits (105), Expect = 3e-49 Identities = 161/186 (87%), Gaps = 12/186 (6%) Strand=Plus/Plus Query 1 ATGGCGAGTAATCAACAACCACCGTCAAATCTGCAGACTTACGGTATACCAATTTACGCC 60 |||||||||||||||||||||||||| ||||| ||||| |||||| |||||||||||||| Sbjct 1 ATGGCGAGTAATCAACAACCACCGTCGAATCTACAGACCTACGGTGTACCAATTTACGCC 60 Query 61 GTCGACTGGA-T-T--------CTGTCAAATCTAAAATCACTAAGGATCAGGATGATGAT 110 |||||||||| | | |||||| ||| ||||||||||||||||||||||||||| Sbjct 61 GTCGACTGGATTCTAGAGGAAGCTGTCAGATCCAAAATCACTAAGGATCAGGATGATGAT 120 Query 111 GATGATC-TCTCCTCGTCGTCGTCATCGTACATCGTTTTATCCGGCGGAGGCGGGGAAGG 169 |||||| | ||||||||||| |||||||||||||||||||||||||| || ||||| Sbjct 121 GATGATGATGGA-TCGTCGTCGTCGTCGTACATCGTTTTATCCGGCGGAGGAGGAGAAGG 179 Query 170 ACGAAG 175 |||||| Sbjct 180 ACGAAG 185 > AT5G50550.1 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:20576870-20578913 FORWARD LENGTH=1346 Length=1346 Score = 255 bits (138), Expect = 2e-67 Identities = 164/176 (93%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 178 TGTGGTT-GCACTGATCTACCTTATCGTATGGCTGTTCATCCTCGTCAAGATGGTCTTAT 236 |||| || |||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 264 TGTGATTGGCACTGATCTACCTTATCGTATGGCTATTCATCCTCGTCAAGGTGGTCTTAT 323 Query 237 TTGCGCATTGCCTAACAGTTGCAGACTGTTTGATTGGGATCACATTACAGAGGTTGATAA 296 ||| ||||||||||||||||||||||||||||||||||| |||||| ||||| |||||| Sbjct 324 TTGTGCATTGCCTAACAGTTGCAGACTGTTTGATTGGGAAAACATTATAGAGGATGATAA 383 Query 297 TGAGGAAGAGTCAGAGAAAG-TGATTAAAGAGTTAAAAGATGTTGGACAACAATTG 351 |||||||||||||||||||| || |||||||||||||||||||||||||||| ||| Sbjct 384 TGAGGAAGAGTCAGAGAAAGTTG-TTAAAGAGTTAAAAGATGTTGGACAACAGTTG 438 Score = 195 bits (105), Expect = 3e-49 Identities = 161/186 (87%), Gaps = 12/186 (6%) Strand=Plus/Plus Query 1 ATGGCGAGTAATCAACAACCACCGTCAAATCTGCAGACTTACGGTATACCAATTTACGCC 60 |||||||||||||||||||||||||| ||||| ||||| |||||| |||||||||||||| Sbjct 1 ATGGCGAGTAATCAACAACCACCGTCGAATCTACAGACCTACGGTGTACCAATTTACGCC 60 Query 61 GTCGACTGGA-T-T--------CTGTCAAATCTAAAATCACTAAGGATCAGGATGATGAT 110 |||||||||| | | |||||| ||| ||||||||||||||||||||||||||| Sbjct 61 GTCGACTGGATTCTAGAGGAAGCTGTCAGATCCAAAATCACTAAGGATCAGGATGATGAT 120 Query 111 GATGATC-TCTCCTCGTCGTCGTCATCGTACATCGTTTTATCCGGCGGAGGCGGGGAAGG 169 |||||| | ||||||||||| |||||||||||||||||||||||||| || ||||| Sbjct 121 GATGATGATGGA-TCGTCGTCGTCGTCGTACATCGTTTTATCCGGCGGAGGAGGAGAAGG 179 Query 170 ACGAAG 175 |||||| Sbjct 180 ACGAAG 185 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17191570158 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5