BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357318
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50650.1 | Symbols: | Transducin/WD40 repeat-like superfami... 255 2e-67
AT5G50550.1 | Symbols: | Transducin/WD40 repeat-like superfami... 255 2e-67
> AT5G50650.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:20610212-20612255 FORWARD LENGTH=1346
Length=1346
Score = 255 bits (138), Expect = 2e-67
Identities = 164/176 (93%), Gaps = 3/176 (2%)
Strand=Plus/Plus
Query 178 TGTGGTT-GCACTGATCTACCTTATCGTATGGCTGTTCATCCTCGTCAAGATGGTCTTAT 236
|||| || |||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 264 TGTGATTGGCACTGATCTACCTTATCGTATGGCTATTCATCCTCGTCAAGGTGGTCTTAT 323
Query 237 TTGCGCATTGCCTAACAGTTGCAGACTGTTTGATTGGGATCACATTACAGAGGTTGATAA 296
||| ||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||
Sbjct 324 TTGTGCATTGCCTAACAGTTGCAGACTGTTTGATTGGGAAAACATTATAGAGGATGATAA 383
Query 297 TGAGGAAGAGTCAGAGAAAG-TGATTAAAGAGTTAAAAGATGTTGGACAACAATTG 351
|||||||||||||||||||| || |||||||||||||||||||||||||||| |||
Sbjct 384 TGAGGAAGAGTCAGAGAAAGTTG-TTAAAGAGTTAAAAGATGTTGGACAACAGTTG 438
Score = 195 bits (105), Expect = 3e-49
Identities = 161/186 (87%), Gaps = 12/186 (6%)
Strand=Plus/Plus
Query 1 ATGGCGAGTAATCAACAACCACCGTCAAATCTGCAGACTTACGGTATACCAATTTACGCC 60
|||||||||||||||||||||||||| ||||| ||||| |||||| ||||||||||||||
Sbjct 1 ATGGCGAGTAATCAACAACCACCGTCGAATCTACAGACCTACGGTGTACCAATTTACGCC 60
Query 61 GTCGACTGGA-T-T--------CTGTCAAATCTAAAATCACTAAGGATCAGGATGATGAT 110
|||||||||| | | |||||| ||| |||||||||||||||||||||||||||
Sbjct 61 GTCGACTGGATTCTAGAGGAAGCTGTCAGATCCAAAATCACTAAGGATCAGGATGATGAT 120
Query 111 GATGATC-TCTCCTCGTCGTCGTCATCGTACATCGTTTTATCCGGCGGAGGCGGGGAAGG 169
|||||| | ||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 121 GATGATGATGGA-TCGTCGTCGTCGTCGTACATCGTTTTATCCGGCGGAGGAGGAGAAGG 179
Query 170 ACGAAG 175
||||||
Sbjct 180 ACGAAG 185
> AT5G50550.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:20576870-20578913 FORWARD LENGTH=1346
Length=1346
Score = 255 bits (138), Expect = 2e-67
Identities = 164/176 (93%), Gaps = 3/176 (2%)
Strand=Plus/Plus
Query 178 TGTGGTT-GCACTGATCTACCTTATCGTATGGCTGTTCATCCTCGTCAAGATGGTCTTAT 236
|||| || |||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 264 TGTGATTGGCACTGATCTACCTTATCGTATGGCTATTCATCCTCGTCAAGGTGGTCTTAT 323
Query 237 TTGCGCATTGCCTAACAGTTGCAGACTGTTTGATTGGGATCACATTACAGAGGTTGATAA 296
||| ||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||
Sbjct 324 TTGTGCATTGCCTAACAGTTGCAGACTGTTTGATTGGGAAAACATTATAGAGGATGATAA 383
Query 297 TGAGGAAGAGTCAGAGAAAG-TGATTAAAGAGTTAAAAGATGTTGGACAACAATTG 351
|||||||||||||||||||| || |||||||||||||||||||||||||||| |||
Sbjct 384 TGAGGAAGAGTCAGAGAAAGTTG-TTAAAGAGTTAAAAGATGTTGGACAACAGTTG 438
Score = 195 bits (105), Expect = 3e-49
Identities = 161/186 (87%), Gaps = 12/186 (6%)
Strand=Plus/Plus
Query 1 ATGGCGAGTAATCAACAACCACCGTCAAATCTGCAGACTTACGGTATACCAATTTACGCC 60
|||||||||||||||||||||||||| ||||| ||||| |||||| ||||||||||||||
Sbjct 1 ATGGCGAGTAATCAACAACCACCGTCGAATCTACAGACCTACGGTGTACCAATTTACGCC 60
Query 61 GTCGACTGGA-T-T--------CTGTCAAATCTAAAATCACTAAGGATCAGGATGATGAT 110
|||||||||| | | |||||| ||| |||||||||||||||||||||||||||
Sbjct 61 GTCGACTGGATTCTAGAGGAAGCTGTCAGATCCAAAATCACTAAGGATCAGGATGATGAT 120
Query 111 GATGATC-TCTCCTCGTCGTCGTCATCGTACATCGTTTTATCCGGCGGAGGCGGGGAAGG 169
|||||| | ||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 121 GATGATGATGGA-TCGTCGTCGTCGTCGTACATCGTTTTATCCGGCGGAGGAGGAGAAGG 179
Query 170 ACGAAG 175
||||||
Sbjct 180 ACGAAG 185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17191570158
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5