BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357348
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51000.1 | Symbols: | F-box and associated interaction doma... 178 1e-43
AT4G09143.1 | Symbols: | pseudogene, type 2 peroxiredoxin -rel... 69.4 6e-11
AT4G33290.1 | Symbols: | F-box and associated interaction doma... 54.7 2e-06
AT1G65990.1 | Symbols: | type 2 peroxiredoxin-related / thiol ... 54.7 2e-06
> AT5G51000.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:20742533-20743669 REVERSE LENGTH=1137
Length=1137
Score = 178 bits (96), Expect = 1e-43
Identities = 215/269 (80%), Gaps = 22/269 (8%)
Strand=Plus/Plus
Query 79 CATTGTGGTAAAGCAGCTAAGGAGATT-ATGGTAG-TCATGATGTATCATTTTGAGGCTT 136
|||| |||||||| ||| ||||||||| | ||| | ||||||| | | |||| ||||||
Sbjct 139 CATTATGGTAAAGAAGCCAAGGAGATTCA-GGT-GATCATGATATGTGATTTAAAGGCTT 196
Query 137 ATTTAATGAGCATCAATCTCCATAACCATAAAGACTTGGTAGATCCATTTATAAAGAAAA 196
|||||||||| ||||||||||||| || |||||||||| |||||||| ||||||| |||
Sbjct 197 GTTTAATGAGCGTCAATCTCCATAATCACAAAGACTTGGCAGATCCATCTATAAAGCAAA 256
Query 197 TAGGTAAACTTAAACACGTCAAAATATG-TGA-AGTATTTCACTGCAACGGCTTATTGTT 254
||||||||||||| || ||| ||||| | | | || ||||| || | |||||||| ||
Sbjct 257 TAGGTAAACTTAATCAAGTCGAAATA-GAT-AGTGTGTTTCATTGTGATGGCTTATTATT 314
Query 255 A-TG-CG---T-C-ACTC-ATGAAT-A-T--AAGCTCGTGGTATGGAACCCGTA-TTCGG 301
| || | | | || | | | || | | |||||| |||| |||||||| || || ||
Sbjct 315 ATTGTTGTTATGCAACCCTAAGGATAACTCGAAGCTCATGGTTTGGAACCCTTACTT-GG 373
Query 302 GTCAAACCAGGTGGATCCAACCTAGAAAC 330
|||||||||||||||||||||||||||||
Sbjct 374 GTCAAACCAGGTGGATCCAACCTAGAAAC 402
> AT4G09143.1 | Symbols: | pseudogene, type 2 peroxiredoxin -related,
similar to type 2 peroxiredoxin, putative | chr4:5821214-5822443
FORWARD LENGTH=1230
Length=1230
Score = 69.4 bits (37), Expect = 6e-11
Identities = 136/179 (76%), Gaps = 25/179 (14%)
Strand=Plus/Plus
Query 580 TTACTCTGTTTTGATTTTACAAGAGAGAGATTTTTGGGCCT-TTCTCTGCCATGTCACTG 638
||| |||||||||||||||||||||||||||| ||||| ||||| || | | || |
Sbjct 692 TTA-TCTGTTTTGATTTTACAAGAGAGAGATTC--GGGCCGCTTCTC--CC-TCT-ACCG 744
Query 639 T-C-GTATTGAAGATTCTGTAATTCTATCT-GTTGTTAGAGAAGAGAAGCTTGCAG-TGT 694
| | | || |||| || | || ||||| || |||| ||||||||||||||||| | |
Sbjct 745 TGCAGCGCTGTAGATG-TG-ACTT-TATCTTGT-GTTAAAGAAGAGAAGCTTGCAGCT-T 799
Query 695 TATATAGGAGGCGTGATGCATTAGAGATAGAGATATGGATTACAAATAAGATTGA-GCC 752
||| | || ||| || | | ||| | |||||||||||||| | ||||||||| |||
Sbjct 800 TATTTC--AG-CGTTAT-C-T--GAGTTGGAGATATGGATTACGACTAAGATTGATGCC 851
> AT4G33290.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:16049573-16050865 FORWARD LENGTH=1293
Length=1293
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 584 TCTGTTTTGATTTTACAAGAGAGAGATTT 612
|||||||||||||||||||||||||||||
Sbjct 689 TCTGTTTTGATTTTACAAGAGAGAGATTT 717
> AT1G65990.1 | Symbols: | type 2 peroxiredoxin-related / thiol
specific antioxidant / mal allergen family protein | chr1:24571603-24573471
REVERSE LENGTH=1662
Length=1662
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 584 TCTGTTTTGATTTTACAAGAGAGAGATTT 612
|||||||||||||||||||||||||||||
Sbjct 1169 TCTGTTTTGATTTTACAAGAGAGAGATTT 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51791405557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5