BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357353
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51050.1 | Symbols: | Mitochondrial substrate carrier famil... 2355 0.0
> AT5G51050.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr5:20753381-20755714 FORWARD LENGTH=1464
Length=1464
Score = 2355 bits (1275), Expect = 0.0
Identities = 1399/1461 (96%), Gaps = 0/1461 (0%)
Strand=Plus/Plus
Query 49 GAAGCTACGAAATCGTCGAAACACGGTTGTTGCAACCCGGTTAAGAAACCCGGACCCGTT 108
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 4 GAAGCTACGAAGTCGTCGAAACAAAATTGTTGCAACCCGGTTAAGAAACCCGGACCCGTT 63
Query 109 TCAATGGATCATGTTCTCTTAGCTCTCCGTGAGACGAGAGAAGAGCGAGATTTACGAATC 168
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 64 TCAATTGATCATGTTCTCTTAGCTCTCCGTGAGACAAGAGAAGAGCGAGATTTACGAATC 123
Query 169 AGGAGCTTGTTCAATTTCTTCGATTCTGAGAATGTTGGTTACTTGGATTGTGCTCAAATC 228
|||||||| |||| |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 124 AGGAGCTTATTCAGTTTCTTTGATTCTGAGAATGTTGGTTACTTAGATTGTGCTCAAATT 183
Query 229 GAGAAGGGTTTGTGTGCGCTTCAAATCCCAAGTGGGTATAAATATGCAAAGGAGTTGTTT 288
|||||||| || |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 184 GAGAAGGGGTTATGTGCGCTTCAAATCCCAAGTGGGTATAAATACGCTAAGGAGTTGTTT 243
Query 289 AGGGTTTGTGATGCCAATCGAGATGGGCGTGTTGATTATCATGAGTTTCGTAGATATATG 348
|||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 244 AGGGTTTGTGATGCGAATAGAGATGGGCGTGTGGATTATCATGAGTTTCGTAGATATATG 303
Query 349 GATGATAAGGAGCTTGAGCTGTATAGAATCTTTCAAGCTATTGATGTTGAGCATAATGGT 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GATGATAAGGAGCTTGAGCTGTATAGAATCTTTCAAGCTATTGATGTTGAGCATAATGGT 363
Query 409 TGCATTTCTCCTGAGGGGCTCTGGGATTCTCTCGTTAAGGCTGGGATTGAGATAAATGAT 468
|| |||||||||||||| || |||||||| |||||||| ||||||||||||||||| |||
Sbjct 364 TGTATTTCTCCTGAGGGACTTTGGGATTCACTCGTTAAAGCTGGGATTGAGATAAAAGAT 423
Query 469 GAGGAGCTAGCTCGTTTTGTGGAACATGTTGACAAGGACAATGATGGAATTATAATGTTT 528
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 424 GAGGAGCTTGCTCGTTTTGTGGAACATGTTGACAAGGACAATGATGGAATCATTATGTTT 483
Query 529 GAAGAATGGAGAGATTTTCTTTTGTTGTACCCTCATGAAGCTACCATTGAAAATATATAC 588
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 484 GAAGAATGGAGAGATTTTCTTTTGCTGTACCCTCACGAAGCTACCATTGAAAATATATAC 543
Query 589 CATCACTGGGAAAGAGTATGCCTTGTAGATATTGGAGAACAAGCTGTGATTCCGGAAGGC 648
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 544 CATCACTGGGAAAGAGTATGTCTTGTAGATATTGGAGAACAAGCTGTAATTCCAGAAGGC 603
Query 649 ATCAGCAAACATGTAAAGAGGAGCAACTATTTCATCGCAGGTGGCATAGCTGGTGCAGCT 708
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 604 ATCAGCAAACATATAAAGAGGAGTAACTATTTCATCGCAGGTGGCATAGCTGGTGCAGCT 663
Query 709 TCTAGGACTGCTACTGCACCTCTAGATCGCTTAAAAGTTCTTTTGCAAATTCAGAAAACT 768
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TCTAGGACTGCTACTGCACCTCTAGATCGCTTAAAAGTTCTTTTGCAAATTCAGAAAACC 723
Query 769 GATGCTAAAATCCGAGAAGCCATAAAGTTGATATGGAAGCAGGATGGAGTTAGGGGtttt 828
||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 724 GATGCTAGAATCCGAGAAGCCATAAAGTTGATATGGAAGCAGGGTGGAGTTAGAGGTTTT 783
Query 829 tttCGAGGTAACGGGTTGAATATTGTGAAGGTAGCACCAGAGAGTGCCATCAAATTCTAT 888
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 784 TTTCGAGGTAACGGGTTGAATATTGTGAAGGTAGCACCAGAGAGTGCCATCAAGTTCTAT 843
Query 889 GCATATGAGCTTTTCAAAAACGCTATTGGTGAAAACATGGGTGAAGACAAAGCGGATATA 948
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 844 GCATATGAGCTTTTCAAAAACGCTATCGGTGAAAACATGGGTGAAGACAAAGCGGATATA 903
Query 949 GGCACAACAGCTAGACTTTTTGCTGGAGGTATGGCTGGTGCAGTGGCTCAAGCCTCTATA 1008
|||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 904 GGCACAACAGTTAGACTTTTTGCTGGAGGAATGGCTGGTGCAGTAGCTCAAGCCTCTATA 963
Query 1009 TACCCTTTGGATCTTGTGAAAACTCGGTTACAGACTTGCACAAGCCAAGCAGGTGTTGTT 1068
|||||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||| |
Sbjct 964 TACCCTTTAGATCTTGTGAAAACTCGGTTGCAGACTTACACGAGCCAAGCAGGTGTTGCT 1023
Query 1069 GTTCCCAGGCTTGGAACGCTCACCAAAGACATACTGGTTCATGAGGGTCCACGCGCCTTT 1128
||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct 1024 GTTCCCAGGCTTGGAACGCTCACCAAAGATATATTGGTTCATGAGGGTCCACGTGCCTTC 1083
Query 1129 TACAAAGGTCTTTTCCCTTCTCTTCTCGGGATTATTCCTTATGCGGGTATCGACCTTGCT 1188
|||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 1084 TACAAAGGTCTTTTCCCTTCTCTTCTTGGGATTATTCCTTACGCGGGTATTGACCTTGCT 1143
Query 1189 GCGTATGAAACATTAAAGGACTTGTCCAGGACATATATTCTTCAAGACGCTGAACCAGGT 1248
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 GCATATGAGACATTAAAGGACTTGTCCAGGACATATATTCTTCAAGACGCTGAACCAGGT 1203
Query 1249 CCGCTCGTGCAACTAGGATGCGGAACAATCTCAGGAGCTCTTGGAGCAACCTGCGTTTAT 1308
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 1204 CCGCTCGTGCAACTAGGATGTGGAACAATCTCAGGAGCTCTTGGAGCAACCTGTGTCTAT 1263
Query 1309 CCTTTGCAGGTTGTGAGAACAAGAATGCAAGCGGAACGAGCAAGAACCTCGATGTCAGGA 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 CCTTTGCAGGTTGTGAGAACAAGAATGCAAGCGGAACGAGCAAGAACCTCGATGTCAGGA 1323
Query 1369 GTATTCAGGAGAACAATAAGTGAAGAAGGTTACAGAGCACTCTACAAAGGGCTTCTACCG 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1324 GTATTCAGGAGAACAATAAGTGAAGAAGGTTACAGAGCACTCTACAAAGGGCTACTACCG 1383
Query 1429 AACCTTCTAAAGGTTGTTCCTGCTGCAAGCATTACATATATGGTTTACGAAGCAATGAAA 1488
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 AACCTTCTAAAGGTAGTTCCTGCTGCAAGCATTACATATATGGTTTACGAAGCAATGAAA 1443
Query 1489 AAGAGTCTAGAACTTGATTGA 1509
|||||||||||||||||||||
Sbjct 1444 AAGAGTCTAGAACTTGATTGA 1464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74447408235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5