BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357356
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51080.1 | Symbols: | RNase H family protein | chr5:2076880... 1290 0.0
AT1G24090.1 | Symbols: | RNase H family protein | chr1:8520834... 579 2e-164
> AT5G51080.1 | Symbols: | RNase H family protein | chr5:20768804-20770977
REVERSE LENGTH=1489
Length=1489
Score = 1290 bits (698), Expect = 0.0
Identities = 883/965 (92%), Gaps = 41/965 (4%)
Strand=Plus/Plus
Query 7 CGTGCGCGTTCATACATTTCCTTGGGGCTGCTTAAGAAGTCCAGCTATGTCAGTTCCCAT 66
||||| ||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||
Sbjct 318 CGTGCTCGTTCATACATTTCCTTGGTGCTGTTTAGGAAGTCCAGCTATGTCACTTCCCAC 377
Query 67 ATTCCATGGAATCGA-TGCTTCTATATGCCTTCAAAATAC-AGTTTAAAGCCTTCATGTG 124
||||||||||||| | |||||||||| ||| ||||| | |||||||||||| || |||
Sbjct 378 ATTCCATGGAATC-AGTGCTTCTATACATCTTTAAAAT-CTAGTTTAAAGCCTGCAAGTG 435
Query 125 TGACTGCACTTGGACTGTCTAGTGTTCATTGCTATT-CTACAAGATCAAAGACTGCCAAA 183
||| | | | | ||||||||||||||||||| || |||||||||||||||| |||
Sbjct 436 TGA--G----T-G--TATCTAGTGTTCATTGCTATTCCT-CAAGATCAAAGACTGCTAAA 485
Query 184 TCAAAGATTTC---AACCGCTGTTTCTGTTTCGGATTCGGATAAAGAGAAAGACGCCTTT 240
|||||||| || || | |||||||||||||||||||||||||||||||||||||||||
Sbjct 486 TCAAAGATGTCAAAAAGCTCTGTTTCTGTTTCGGATTCGGATAAAGAGAAAGACGCCTTT 545
Query 241 TTCGTTGTTCGGAAGGGTGACATTATTGGAATTTATAAGGATTTGATTGATTGTCAAGCT 300
|| |||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 546 TTTGTTGTTCGAAAGGGTGACATTGTTGGAATTTATAAGGATTTGATCGATTGTCAAGCT 605
Query 301 CAAGTTGGATCTTCGGTATATGATCTTCCAGTTAGCGTTTATAAGGGTAAGGGATACTCG 360
||||||||||||||||| ||||||| ||||||||||| || | | |||||||||||||
Sbjct 606 CAAGTTGGATCTTCGGTTTATGATCCTCCAGTTAGCG-TT-T-A---TAAGGGATACTCG 659
Query 361 TTGCTTAAAGACACGACGGAGGAGTATCTTTCTAGTGTTGGGCTGAAGAAACCACTCTAT 420
||||| |||||||| | ||||||| |||||||| |||||| |||||||||||||||||
Sbjct 660 TTGCTCAAAGACAC--C-GAGGAGTGTCTTTCTACTGTTGGTTTGAAGAAACCACTCTAT 716
Query 421 GTTTTTAGAGCTTTTGACTTAAAAGAAGATATGTTTGGAGCTCTTACACCTTTTCTTTTC 480
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 717 GTTTTTAGAGCTTTAGACTTAAAAGAAGATATGTTTGGAGCTCTTACACCTTGTCTCTTC 776
Query 481 CAGGATCAACTTCCTTCAGCTTCCATGTCAGTTGTTAATCCTTTGGAAAAGCTTGCTAAG 540
|||||||||||||||||||||||||||||| | || |||||||||||| ||
Sbjct 777 CAGGATCAACTTCCTTCAGCTTCCATGTCA---G--------TT-GAAAAGCTTGCTGAG 824
Query 541 C-AGAAGCCATCTGCTGATACCTCATATGAAACTTGCATTATTGAGTTTGACGGTGCATC 599
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 CTAG-AGCCATCTGCTGATACCTCATATGAAACTTGCATTATTGAGTTTGACGGTGCATC 883
Query 600 AAAAGGAAATCCCGGTCTCTCTGGCGCTGCAGCTGTACTGAAAACTGAGGACGGAAGCTT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 AAAAGGAAATCCCGGTCTCTCTGGCGCTGCAGCTGTACTGAAAACTGAGGACGGAAGCTT 943
Query 660 GATTTGTAAAATGCGTCAAGGTTTAGGAATTGCCACAAACAATGCAGCAGAATATCATGG 719
||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 944 GATTTTTAAAATGCGTCAAGGTTTAGGAATTGCCACAAATAATGCAGCTGAATATCATGG 1003
Query 720 ATTAATCCTAGGATTGAAGCATGCTATCGAGAAAGGTTACACGAAAATTAAAGTGAAAAC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 ATTAATCCTAGGATTGAAGCATGCTATCGAGAAAGGTTACACGAAAATTAAAGTGAAAAC 1063
Query 780 TGACTCCAAGCTAGTCTGTATGCAGATGAAAGGTCAATGGAAGGTAAACCACGAGGTACT 839
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 TGACTCCAAGCTAGTTTGTATGCAGATGAAAGGTCAATGGAAGGTAAACCACGAGGTACT 1123
Query 840 CTCGAAGCTCCACAAGGAAGCAAAACAACTTAGCGACCAATGTCTCTCTTTTGAGATCAG 899
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1124 CTCGAAGCTCCACAAGGAAGCAAAACAACTTAGCGACAAATGTCTCTCTTTTGAGATCAG 1183
Query 900 TCAAGTACTAAGGAATTTAAACTCTGATGCGGATGAACAGGCAAATATGGCTGCTCGTCT 959
||| ||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1184 TCATGTACTTAGGAGTTTAAACTCTGATGCGGATGAACAGGCAAACATGGCTGCTCGTCT 1243
Query 960 TTCTG 964
|||||
Sbjct 1244 TTCTG 1248
> AT1G24090.1 | Symbols: | RNase H family protein | chr1:8520834-8523121
FORWARD LENGTH=1335
Length=1335
Score = 579 bits (313), Expect = 2e-164
Identities = 427/481 (89%), Gaps = 11/481 (2%)
Strand=Plus/Plus
Query 484 GATCAACTTCCTTCAGCTTCCATGTCAGTTGTTAATCCTTTGGAAAAGCTTGCTAAGCAG 543
|||||||||||||||||||| || || || | ||||||||||||||||| | ||| |
Sbjct 562 GATCAACTTCCTTCAGCTTCTATATC--TT-ATGATCCTTTGGAAAAGCTTTCAAAGGTG 618
Query 544 AAGCCATCTGCTGATACCTCATATGAAACTTGCATTATTGAGTTTGACGGTGCATCAAAA 603
||||||||||| ||| ||| | ||||||||| |||| ||||||||||||||||||||
Sbjct 619 GAGCCATCTGCTTATATATCAGACGAAACTTGCTTTATCGAGTTTGACGGTGCATCAAAG 678
Query 604 GGAAATCCCGGTCTCTCTGGCGCTGCAGCTGTACTGAAAACTGAGGACGGAAGCTTGATT 663
||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 679 GGAAATCCCGGTCTCTCCGGCGCAGCAGCGGTACTGAAAACTGAGGACGGGAGCTTGATT 738
Query 664 TGTAAAATGCGTCAAGGTTTAGGAATTGCCACAAACAATGCAGCAGAATATCATG-GATT 722
|||| | ||||||||||||| ||||||||||||||||||||||||||||| |||| | ||
Sbjct 739 TGTAGAGTGCGTCAAGGTTTGGGAATTGCCACAAACAATGCAGCAGAATACCATGCG-TT 797
Query 723 AATCCTAGGATTGAAGCATGCTATCGAGAAAGGTTACACGAAAATTAAAGTGAAAACTGA 782
|||||||||||||||| ||||||| ||||||||||||| ||| |||||||||||| |||
Sbjct 798 AATCCTAGGATTGAAGTATGCTATTGAGAAAGGTTACAAGAATATTAAAGTGAAAGGTGA 857
Query 783 CTCCAAGCTAGTCTGTATGCAGATGAAAGGTCAATGGAAGGTAAACCACGAGGTACTCTC 842
||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |
Sbjct 858 CTCCAAGCTGGTCTGTATGCAGATTAAAGGTCAATGGAAGGTAAACCATGAGGTACTCGC 917
Query 843 GAAGCTCCACAAGGAAGCAAAACAACTTAGCGACCAATGTCTCTCTTTTGAGATCAGTCA 902
|||||||||||||||||||||| |||| || || ||||| |||||||||||||||||||
Sbjct 918 AAAGCTCCACAAGGAAGCAAAACTACTTTGCAACAAATGTGTCTCTTTTGAGATCAGTCA 977
Query 903 AGTACTAAGGAATTTAAACT-CTGATGCGGATGAACAGGCAAA-TATGGCTGCTC-GTCT 959
||||||||||||||||| | ||||||||||||| |||||||| | |||||| || ||||
Sbjct 978 TGTACTAAGGAATTTAAA-TGCTGATGCGGATGAGCAGGCAAACT-TGGCTG-TCCGTCT 1034
Query 960 T 960
|
Sbjct 1035 T 1035
Score = 388 bits (210), Expect = 4e-107
Identities = 408/496 (82%), Gaps = 44/496 (9%)
Strand=Plus/Plus
Query 9 TGCGCGTTCATACATTTCCTTGGGGCTGCTTAAGAAG-TCCAGCTATGTCAGTTCCCATA 67
|||||||||||||||| ||||||| ||||||||| || || ||||||||||||| | ||
Sbjct 18 TGCGCGTTCATACATTGCCTTGGGACTGCTTAAG-AGATCAAGCTATGTCAGTT--C-TA 73
Query 68 TTCCATGGAATCG-ATG---CTTCTATATGCCTTCAAAATACA-GTTTAAAGCCT-TCA- 120
|||| |||||| | ||| |||||||||||||||||||| || ||||||||||| | |
Sbjct 74 TTCCGTGGAAT-GAATGTTTCTTCTATATGCCTTCAAAAT-CATGTTTAAAGCCTGT-AG 130
Query 121 -TGTGTG-ACTGCACTTGGACTGTCTAGTGTTCATTGC-TATT-CTACAAGATCAAAGAC 176
|||| | | || ||||| | | ||||||||||| | |||| || ||||||||||| |
Sbjct 131 CTGTGAGTAGTGTGTTTGGAATCTGTAGTGTTCATT-CTTATTCCT-CAAGATCAAAGGC 188
Query 177 TGCCAAATCAAAGA--TT-TCAACCGCTGTTTCTGTTTCGGAT-TCGGATAAAGAGAAA- 231
|| |||||||||| || ||| | | | | |||||||| | | ||||||||| |||
Sbjct 189 TGTTAAATCAAAGATGTTATCATCAACCG--T-TGTTTCGGCTGT-GGATAAAGA-AAAG 243
Query 232 GACGCCTTTTTCGTTGTTCGGAAGGGTGACATTATTGGAATTTATAAGGATTTGATTGAT 291
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 244 GACGCCTTTTTCGTTGTTCGGAAGGGTGATGTTATTGGAATTTATAAGGATTTGAGTGAT 303
Query 292 TGTCAAGCTCAAGTTGGATCTTCGGTATATGATCTTCCAGTTAGCGTTTATAAGGGTAAG 351
||||| |||||||||||||||||||| | ||||||||| ||||| ||||||||||| |
Sbjct 304 TGTCAGGCTCAAGTTGGATCTTCGGTGTTTGATCTTCCGGTTAGTGTTTATAAGGG-A-- 360
Query 352 GGATACTCGTTGCTTAAAGACAC-GACGGAGGAGTATCTTTCTAGTGTTGGGCTGAAGAA 410
||||| |||| ||||||||| || ||| | ||||| ||| ||||||| |||||||
Sbjct 361 ---TACTCTTTGCCTAAAGACACTGA-GGA--A-TATCTCTCTTCTGTTGGGTTGAAGAA 413
Query 411 ACCACTCTAT-GTTTTTAGAGCTTTTGACTTAAAAGAAGATATGTTTGGAGCTCTTACAC 469
|||||| ||| |||| ||||||| || || ||||| ||||||||||| ||||||||||
Sbjct 414 ACCACTATATAGTTTA-AGAGCTTCAGATTTGAAAGATGATATGTTTGGTGCTCTTACAC 472
Query 470 CTTTTCTTTTCCAGGA 485
| | ||||||||||||
Sbjct 473 CATGTCTTTTCCAGGA 488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47421034768
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5