BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357390
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51490.1 | Symbols: | Plant invertase/pectin methylesterase... 2362 0.0
AT5G51500.1 | Symbols: | Plant invertase/pectin methylesterase... 1718 0.0
> AT5G51490.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr5:20913553-20915606 REVERSE LENGTH=1738
Length=1738
Score = 2362 bits (1279), Expect = 0.0
Identities = 1513/1625 (93%), Gaps = 19/1625 (1%)
Strand=Plus/Plus
Query 1 ATGAATATGATGATGCAAAAAATCTCTTTTCTATCTCTACATTTACTATTACTACTAGTA 60
||||||||||||||||||||| ||||| |||||| |||||||||| |||||||| || ||
Sbjct 1 ATGAATATGATGATGCAAAAACTCTCTATTCTATTTCTACATTTAATATTACTAGTACTA 60
Query 61 CTCTGCGTCCATCCTCTCACCACCGTAGCCGACGGCAATTCCACCGACATTGACCGATGG 120
||||||||||||||||||||||||||||||||| |||||||||||| | | |||
Sbjct 61 CTCTGCGTCCATCCTCTCACCACCGTAGCCGACCGCAATTCCACCG--A-T------TGG 111
Query 121 TGCGACAAAACTCCATATCCTGATCCATGCAAATGCTACTTCAAGAACCACAACGGATTT 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 TGCGACAAAACTCCATACCCTGATCCATGCAAATGCTACTTCAAGAACCACAACGGATTT 171
Query 181 CGACAGCCGACACAAATATCCGAATTCCGAGTAATGCTGGTGGAAGCAGCCATGGATCGA 240
| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 172 CAACAGCCGACACAATTATCCGAGTTCCGAGTAATGCTGGTGGAAGCAGCCATGGATCGG 231
Query 241 GCTATATCCGCCCGGGCCGAGTTGACTAATTCCGGCCGGAACTACACAGATATCAAGAAA 300
|| ||||||||||| ||||||||||||||||||||| ||||| ||| |||| |||||||
Sbjct 232 GCCATATCCGCCCGTGCCGAGTTGACTAATTCCGGCAAGAACTGCACGGATAGCAAGAAA 291
Query 301 CAAGCCGTTTTGACAGATTGCATTGACCTTTACAGAGACACGATCATGCAGTTAAACCGG 360
||||| |||||| | |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 292 CAAGCAGTTTTGGCGGATTGCATTGACCTCTATGGAGACACGATCATGCAGTTAAACCGG 351
Query 361 ACGCTGCAGGGCGTGTCTCCAAAAGCAGGTGCTGC-AAAACGTTGCACTGACTTCGACGC 419
|| |||| ||||||||||| ||||| ||||| || |||| |||||||||||||||||||
Sbjct 352 ACATTGCATGGCGTGTCTCCTAAAGCCGGTGCCGCGAAAA-GTTGCACTGACTTCGACGC 410
Query 420 GCAGACGTGGCTGAGTACAGCGCTTACAAACACCGAGACCTGCCGACTTGGCTCATCCGA 479
|| ||||||||||| || |||||||||||||||||||||||||||| ||||||||||||
Sbjct 411 TCAAACGTGGCTGAGCACCGCGCTTACAAACACCGAGACCTGCCGACGTGGCTCATCCGA 470
Query 480 TTTCAACGTCTCAGATTTCATCACACCCATCGTTTCAAACACCAAAATCTCCCATCTCAT 539
||| |||||| |||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 471 TTTAAACGTCACAGACTTCATCACACCCATCGTTTCAAACACCAAAATCTCCCACCTCAT 530
Query 540 CAGCAACTGCTTAGCTGTCAAC-GAGGCCCTCTTGACCGCCGGAAACAACGGCAACACCA 598
|||||||||||||| |||||| || |||||||||||||| |||||||| ||||||||||
Sbjct 531 TAGCAACTGCTTAGCCGTCAACGGA-GCCCTCTTGACCGCTGGAAACAAAGGCAACACCA 589
Query 599 CTGCTAATCAGAAGGGTTTTCCGACGTGGGTTT-CTGACAAAGAT-AGAAGACTTCTGCG 656
|||||||||| ||||| |||||||||||| ||| | | |||||| || ||||| |||||
Sbjct 590 CTGCTAATCAAAAGGGCTTTCCGACGTGGCTTTCCCG-TAAAGATAAG-AGACTCCTGCG 647
Query 657 TGTGGTCCGAGCCAACCTTGTGGTGGCCAAGGACGGATCAGGACATTTCAACACGGTACA 716
|| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 648 TGCCGTTCGAGCCAACCTCGTGGTGGCCAAGGACGGATCAGGACATTTCAACACGGTACA 707
Query 717 AGCGGCTATTGACGTAGCTGGACGTAGAAAGGTGACGTCAGGGAGGTTCGTTATATACGT 776
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 708 AGCGGCTATTGACGTGGCGGGACGGAGAAAGGTGACGTCAGGGAGGTTCGTTATATACGT 767
Query 777 GAAAAGAGGGATATATCAAGAAAACATAAACGTACGTCTAAATAATGATGACATAATGTT 836
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 768 AAAAAGAGGTATATATCAAGAAAACATTAACGTACGTCTAAATAATGATGACATAATGTT 827
Query 837 GGTCGGAGATGGAATGAGATCCACCATTATCACCGGCGGTCGAAGTGTCAAAGGAGGTTA 896
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 828 GGTCGGAGATGGAATGAGATCCACCATTATCACCGGCGGTCGAAGTGTCCAAGGAGGTTA 887
Query 897 CACCACTTACAATTCCGCTACTGCCGGTATTGAGGGACTTCACTTCATAGCCAAAGGCAT 956
|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 888 CACCACGTACAATTCCGCTACTGCCGGTATCGAGGGACTTCACTTCATTGCCAAAGGCAT 947
Query 957 AACGTTTCGGAACACAGCGGGTCCGGCCAAGGGCCAGGCCGTGGCACTTCGGTCATCGTC 1016
||||||| |||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 948 AACGTTTAGGAACACAGCTGGTCCAGCCAAGGGCCAGGCCGTGGCACTTCGTTCATCGTC 1007
Query 1017 TGACCTCTCAATCTTCTACAAATGCTCAATCGAAGGATACCAAGACACACTTATGGTCCA 1076
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1008 TGACCTCTCAATCTTCTACAAATGCTCAATCGAAGGATACCAAGATACACTGATGGTCCA 1067
Query 1077 TTCTCAACGCCAGTTTTACCGCGAGTGTTACATCTATGGAACCGTCGATTTCATATTTGG 1136
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1068 TTCTCAACGCCAGTTTTACCGTGAGTGTTACATCTATGGAACCGTCGATTTCATATTCGG 1127
Query 1137 TAATGCGGCCGCCGTATTCCAAAACTGTATCATCCTCCCTCGCCGGCCACTCAAAGGTCA 1196
||| ||||| || || |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1128 TAACGCGGCTGCTGTTTTCCAAAACTGTCTCATCCTCCCTCGCCGGCCACTCAAAGGTCA 1187
Query 1197 AGCCAATGTAATTACCGCACAAGGTCGTGCTGATCCGTTTCAGAACACAGGGATCTCTAT 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 AGCCAATGTAATTACCGCACAAGGTCGTGCTGATCCGTTTCAGAACACAGGGATCTCTAT 1247
Query 1257 CCATAACTCAAGAATTCTACCGGCTCCTGATCTAAAACCAGTGGTAAGTACCGTTAAGAC 1316
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1248 CCATAACTCAAGAATCCTACCGGCTCCTGATCTAAAACCAGTGGTCGGTACCGTTAAGAC 1307
Query 1317 GTACATGGGCCGGCCTTGGATGAAGTTCTCACGAACCGTGGTTCTTCAGACGTATTTGGA 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 GTACATGGGCCGGCCTTGGATGAAGTTCTCACGAACCGTGGTTCTTCAGACGTATTTGGA 1367
Query 1377 TAATGTTGTGAGTCCGGTCGGGTGGTCTCCGTGGATTGAAGGTTCGGTGTTTGGTCTGGA 1436
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 TAATGTTGTGAGTCCAGTCGGGTGGTCTCCGTGGATTGAAGGTTCGGTGTTTGGTCTGGA 1427
Query 1437 CACTCTGTTCTATGCAGAATATAAGAATACCGGACCAGCTTCATCCACGAGGCAGCGTGT 1496
|||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1428 CACTCTCTTCTATGCAGAATATAAGAATACTGGACCAGCTTCATCCACGAGGTGGCGTGT 1487
Query 1497 CCA-TTGGAAAGGGTATCATGTGTTGGGTAGAGCTTCAGATGCATCTGCTTTCACTGTTG 1555
| | ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1488 C-AGTTGGAAAGGGTTTCATGTGTTGGGTAGAGCTTCCGATGCATCTGCTTTCACTGTTG 1546
Query 1556 GAAAATTTATCGCCGGTACCGCATGGCTCCCAAGCACCGGCATACCTTTCACTTCCGGAC 1615
|||| |||||||| ||||| |||||||||||| ||||||||||||| |||||||| ||||
Sbjct 1547 GAAAGTTTATCGCTGGTACAGCATGGCTCCCACGCACCGGCATACCCTTCACTTCTGGAC 1606
Query 1616 TCTAA 1620
|||||
Sbjct 1607 TCTAA 1611
> AT5G51500.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr5:20917929-20919838 REVERSE LENGTH=1623
Length=1623
Score = 1718 bits (930), Expect = 0.0
Identities = 1402/1630 (86%), Gaps = 32/1630 (2%)
Strand=Plus/Plus
Query 7 ATGATGATGCAAAAAATCTCTTTTCTATCTCTACATTTACTATTACTACTAGTACTCTGC 66
|||||| ||||||| |||||||||||||||||||||||||||||| || || ||||||||
Sbjct 10 ATGATGGTGCAAAATATCTCTTTTCTATCTCTACATTTACTATTAATATTACTACTCTGC 69
Query 67 GTCCATCCTCTCACCACCGTAGCCGACGGCAATTCCACCGACATTGACCGATGGTGCGAC 126
||| |||||| ||||||||||||||||||||||| ||| |||||||| | |||||||||
Sbjct 70 CTCCGTCCTCTTACCACCGTAGCCGACGGCAATTCTACCAACATTGACGGGTGGTGCGAC 129
Query 127 AAAACTCCATATCC-TGATCCATGCAAATGCTACTTCA-AGAACCACAACGGATTTCGAC 184
||||||||||| || | ||||||||||| ||||||||| | || |||| ||| |||||||
Sbjct 130 AAAACTCCATACCCAT-ATCCATGCAAACGCTACTTCATA-AAACACAGCGGTTTTCGAC 187
Query 185 AGCCGACACAAATATCCGAATTCCGAGTAATGCTGGTGGAAGCAGCCATGGATCGAGCTA 244
||| |||||||||||||| ||||||||| | || |||||||||||||||||||| ||
Sbjct 188 TGCCAACACAAATATCCGAGTTCCGAGTACTTCTCGTGGAAGCAGCCATGGATCGGGCCG 247
Query 245 TATCCGCCCGGGCCGAGTTGACTAATTCCGGCCGGAACTACACAGATATCAAGAAACAAG 304
||||||| ||| | | ||||| ||||| || ||||| ||||||| ||||||||||||
Sbjct 248 TATCCGCTTGGGACAAATTGACCAATTCAAGCAAGAACTGCACAGATTTCAAGAAACAAG 307
Query 305 CCGTTTTGACAGATTGCATTGACCTTTACAGAGACAC-GATCATGCAGTTAAACCGGACG 363
| |||||| | ||||||||| |||| || ||||||| | |||||||| ||||| | |||
Sbjct 308 CAGTTTTGGCGGATTGCATTAACCTCTATGGAGACACTG-TCATGCAGCTAAACAGAACG 366
Query 364 CTGCAGGGCGTGTCTCCAAAAGCAGGTGCTGCAAAACGTTGCACTGACTTCGACGCGCAG 423
||||||||||||||| ||||| | | | | | || | || |||||||||||||| ||
Sbjct 367 CTGCAGGGCGTGTCTTCAAAAAC-CG-G--G-AGAA-GGTGTACTGACTTCGACGCTCAA 420
Query 424 ACGTGGCTGAGTACAGCGCTTACAAACACCGAGACCTGCCGACTTGGCTCATCCGATTTC 483
|||||||| || || |||||||||||||| ||||| ||||||| ||||| |||||| ||
Sbjct 421 ACGTGGCTAAGCACCGCGCTTACAAACACTGAGACTTGCCGACGCGGCTCCTCCGATCTC 480
Query 484 AACGTCTCAGATTTCATC-ACACCCATCGTTTCAAACACCAAAATCTCCCATCTCATCAG 542
|||||||||||||||| | ||||| || ||||||||||| |||||||| || ||||||||
Sbjct 481 AACGTCTCAGATTTCA-CTACACCTATTGTTTCAAACACAAAAATCTCTCACCTCATCAG 539
Query 543 CAACTGCTTAGCTGTCAAC-GAGGCCCTCTTGACCGCCGGAAACAACGGCAACACCACTG 601
|||||||||||| |||||| || ||||| |||||||||||||| || | || |||||| |
Sbjct 540 CAACTGCTTAGCCGTCAACGGA-GCCCTTTTGACCGCCGGAAAAAATGACAGCACCACCG 598
Query 602 CT-AATCAGAAGGGTTTTCCGACGTGGGTTT-CTGACAAAGATAGAAGACTTCTGC--GT 657
| | || ||||||||||| |||||||||| | | ||||| || |||||| ||| |
Sbjct 599 GTGATTC-CAAGGGTTTTCCAACGTGGGTTTCCCG-TAAAGAGAGGAGACTTTTGCAATT 656
Query 658 G---T-GGTCCGAGCCAACCTTGTGGTGGCCAAGGACGGATCAGGACATTTCAACACGGT 713
| | || || || || ||||| |||||||| |||||||| ||||||||||| |||||
Sbjct 657 GCAATCAGTGCGTGCGAATCTTGTAGTGGCCAAAGACGGATCGGGACATTTCAAGACGGT 716
Query 714 ACAAGCGGCTATTGACGTAGCTGGACGTAGAAAGGTGACGTCAGGGAGGTTCGTTATATA 773
||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 717 GCAAGCGGCTATTGACGTGGCGGGACGGAGAAAGGTGACGTCAGGGAGGTTCGTTATATA 776
Query 774 CGTGAAAAGAGGGATATATCAAGAAAACATAAACGTACGTCTAAATAATGATGACATAAT 833
||| |||||||||||||||||||||||| | ||||||||||||||||||||| |||||||
Sbjct 777 CGTAAAAAGAGGGATATATCAAGAAAACCTTAACGTACGTCTAAATAATGATAACATAAT 836
Query 834 GTTGGTCGGAGATGGAATGAGATCCACCATTATCACCGGCGGTCGAAGTGTCAAAGGAGG 893
||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 837 GTTGGTCGGAGATGGAATGAGATATACCATTATCACCGGTGGTCGAAGTGTTAAAGGAGG 896
Query 894 TTACACCACTTACAATTCCGCTACTGCCGGTATTGAGGGACTTCACTTCATAGCCAAAGG 953
||||||||| |||| ||| || ||||||||||| |||||||||||||||||||| |||||
Sbjct 897 TTACACCACGTACAGTTCTGCCACTGCCGGTATAGAGGGACTTCACTTCATAGCAAAAGG 956
Query 954 CATAACGTTTCGGAACACAGCGGGTCCGGCCAAGGGCCAGGCCGTGGCACTTCGGTCATC 1013
|||| |||| | |||||| || |||||||| || |||||||| |||||||| ||||||||
Sbjct 957 CATAGCGTTCCAGAACACGGCAGGTCCGGCAAAAGGCCAGGCAGTGGCACTACGGTCATC 1016
Query 1014 GTCTGACCTCTCAATCTTCTACAAATGCTCAATCGAAGGATACCAAGACACACTT-ATGG 1072
|| ||||||||||||||||| | |||||| ||||||||||||||||||||| || ||||
Sbjct 1017 CTCGGACCTCTCAATCTTCTATAGATGCTCCATCGAAGGATACCAAGACACA-TTGATGG 1075
Query 1073 TCCATTCTCAACGCCAGTTTTACCGCGAGTGTTACATCTATGGAACCGTCGATTTCATAT 1132
||||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||| |
Sbjct 1076 TCCATTCACAACGCCAGTTTTATCGCGAGTGCTACATCTATGGAACTGTCGATTTCATCT 1135
Query 1133 TTGGTAATGCGGCCGCCGTATTCCAAAACTGTATCATCCTCCCTCGCCGGCCACTCAAAG 1192
| || || ||||||| || |||||||||||||||||||| ||||||| |||||||||||
Sbjct 1136 TCGGAAACGCGGCCGTTGTTTTCCAAAACTGTATCATCCTGCCTCGCCTGCCACTCAAAG 1195
Query 1193 GTCAAGCCAATGTAATTACCGCACAAGGTCGTGCTGATCCGTTTCAGAACACAGGGATCT 1252
|||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1196 GTCAAGCCAATGTAATAACCGCACAAGGTCGTACTGATCTATTTCAGAACACAGGGATCT 1255
Query 1253 CTATCCATAACTCAAGAATTC-TACCGGCTCCTGATCT-AAAACCAGTGGTAAGTACCGT 1310
|||| |||||||||| ||| | |||| |||||||| || |||||| ||||| ||| ||
Sbjct 1256 CTATTCATAACTCAATAAT-CATACCCGCTCCTGA-CTTAAAACCGGTGGTCCGTAGTGT 1313
Query 1311 TAAGACGTACATGGGCCGGCCTTGGATGAAGTTCTCACGAACCGTGGTTCTTCAGACGTA 1370
|||||| || ||||| || || ||||||| || ||| || |||||||||||| |||||||
Sbjct 1314 TAAGACATATATGGGTCGACCCTGGATGATGTACTCCCGCACCGTGGTTCTTAAGACGTA 1373
Query 1371 TTTGGATAATGTTGTGAGTCCGGTCGGGTGGTCTCCGTGGATTGAAGGTTCGGTGTTTGG 1430
| |||| |||||||||||| ||||||||||||||||||| | |||||||| || |||
Sbjct 1374 CATCGATAGTGTTGTGAGTCCTGTCGGGTGGTCTCCGTGGACTAAAGGTTCGACGTATGG 1433
Query 1431 TCTGGACACTCTGTTCTATGCAGAATATAAGAATACCGGACCAGCTTCATCCACGAGGCA 1490
||| ||||| ||||||||||| ||||||||||||| |||||| |||||||||||||||
Sbjct 1434 TCTCGACACGCTGTTCTATGCGGAATATAAGAATATCGGACCGGCTTCATCCACGAGGTG 1493
Query 1491 GCGTGTCCATTGGAAAGGGTATCATGTGTTGGGTAGAGCTTCAGATGCATCTGCTTTCAC 1550
|||||||| ||||||||||| |||||||||| ||| |||||| ||||||||||||||| |
Sbjct 1494 GCGTGTCCGTTGGAAAGGGTTTCATGTGTTGAGTAAAGCTTCCGATGCATCTGCTTTCTC 1553
Query 1551 TGTTGGAAAATTTATCGCCGGTACCGCATGGCTCCCAAGCACCGGCATACCTTTCACTTC 1610
|||||||||||| ||||| ||||| || ||||||||| || | |||||||| ||||||||
Sbjct 1554 TGTTGGAAAATTCATCGCTGGTACTGCGTGGCTCCCAGGCTCTGGCATACCCTTCACTTC 1613
Query 1611 CGGACTCTAA 1620
| |||||||
Sbjct 1614 AGAACTCTAA 1623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80019668730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5