BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357414
Length=1794
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51770.1 | Symbols: | Protein kinase superfamily protein | ... 1389 0.0
> AT5G51770.1 | Symbols: | Protein kinase superfamily protein
| chr5:21031030-21032994 FORWARD LENGTH=1965
Length=1965
Score = 1389 bits (752), Expect = 0.0
Identities = 904/974 (93%), Gaps = 23/974 (2%)
Strand=Plus/Plus
Query 1 ATGCCGTCACGAACACTCCCGTCGCCGGCTCCGGTAAATTCACCATTCTCTTCCTCCGTC 60
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1 ATGCCGTCACGAACACTCCCGTCGCCGGCACCGGTAAATTCACCGTTCTCTTCCTCCGTC 60
Query 61 GCTTCTCACCATGATAGAACCACCACACGCATCTTCCCTCCGCTTGCAGCTGTAGGTTTC 120
| |||||||||| | |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 ACACCTCACCATGAAACAACCACCACACGCATCTTCCCTCCTCTTGCAGCTGTAGGTTTC 120
Query 121 TCTCTCTTCATAACTCTCTCCATCTGTTTCTGCAAATTCAACCGCAAACGCCGATTTCCC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 TCTCTCTTCATAACTCTCTCCATCTGTTTCTGCAAATTCAACCGCAAACGCCGATCTCCC 180
Query 181 GCCGCCGTAACCTCATCCTCGT-CACCACCGCAGAAACCTCCATTACACGAATTCTCCTA 239
||||||||| |||| ||||| | |||| |||||||||| || |||||||| ||||||||
Sbjct 181 GCCGCCGTAGCCTCCTCCTC-TACACCGCCGCAGAAACAACCGTTACACGAGTTCTCCTA 239
Query 240 CTCATCTCTCCGTAAAGCCACCTCCTCTTTCTCACCGGAGAATCGACTTGGTCAAGGCGG 299
|||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 240 CTCATCTCTCCGTAAAGCCACCGCTTCTTTCTCACCGGAGAATCGACTAGGTCAAGGCGG 299
Query 300 ATTCGGCTCTGTCTTCCGTGGAACTTTATCTCCTTCCTCC---GGTGGTAATGTCGCCGT 356
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 ATTCGGCTCTGTATTCCGTGGAACTTTATCTCCTTCCTCCGGTGGTGGTAATGTCGCCGT 359
Query 357 TAAGGTAATGGATTCAGGTTCTCTTCAAGGAGAAAGAGAGTTTCAAAACGAGCTTTTCTT 416
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TAAAGTAATGGATTCAGGTTCTCTTCAAGGAGAAAGAGAGTTTCAAAACGAGCTTTTCTT 419
Query 417 CGCCGGTAAGCTTGATTCTCCTCATGTTGTTTCCGTTATTGGCTTCTCT---CGACGACG 473
||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 420 CGCTGGTAAGCTTGATTCTCCTCATGTAGTTTCCGTTATTGGCTTCTCTCGACGACGACG 479
Query 474 AAGCCGTTTGATTCTTGTCTACGAGCTTATGGATAATGGAAATCTTCAAGATGCTCTTCT 533
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 480 AAGCCGTTTGATTCTTGTATACGAGCTTATGGATATTGGAAATCTTCAAGATGCTCTTCT 539
Query 534 TCTTCGTAAATCTCCTGAGCTTATGATATGGAATAGAAGATTTCTTGTTGCCATTGATAT 593
|| ||||| ||||||||||||||||||||||||| |||||||||| ||||| ||||||||
Sbjct 540 TCATCGTAGATCTCCTGAGCTTATGATATGGAATCGAAGATTTCTCGTTGCGATTGATAT 599
Query 594 AGCTAAAGGGATTGAATATTTACATAGCTTGAAT-CTTCCTGTGATTCATGGAGATTTGA 652
|||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 600 AGCTAAAGGGATTGAACATTTACATAGCTTGAATCCTT-GTGTGATTCATGGAGATTTGA 658
Query 653 AACCTAGTAATATATTGTTGGATCGATTCTTCTCTGCTAAGATCTCTGATTTTGGTTTAG 712
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AACCTAGTAATGTATTGTTGGATCGATTCTTCTCTGCTAAGATCTCTGATTTTGGTTTAG 718
Query 713 CTAGGTTGAAATCTGAACATGTTGAAGTTAAAGTAGCATCGGAGAGTGATGAAGTCAATG 772
|||||||||||||||||||||||||||||||||||| || |||||||||| | | |
Sbjct 719 CTAGGTTGAAATCTGAACATGTTGAAGTTAAAGTAGTGTCTGAGAGTGATG---T-A--G 772
Query 773 TAGTGGAAGATTATGGATCTGTAGTTGAAGAAGTGGAGAGTGTGGTTACTAATACTACTG 832
| | | |||||||||| ||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 773 T-G-G-AAGATTATGGTTCTGTAGTTGAAGAAGTTGAGAGTGTTGTTACTAATACTACTG 829
Query 833 GTTATGATGAATCTAACTTTGGATTCACTGATCAGTCTCCGGTGCCTCTTTCATCGCCGG 892
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 GTTGTGATGAATCTAACTTTGGATTCACTGATCAGTCTCCGGTGCCTCTTTCATCGCCGG 889
Query 893 AGATGGTGGCA-CAGGCT-CCTATGGCATCGCCGGAAACAGTTGTATCTGTTTCGCCGGA 950
||||||||| | |||| | |||||| | || ||||| ||||||||||| ||||| |||||
Sbjct 890 AGATGGTGG-AGCAGG-TGCCTATGACGTCACCGGAGACAGTTGTATCGGTTTCTCCGGA 947
Query 951 AATGGGGGAGAAAG 964
|||||||||||||
Sbjct 948 GATGGGGGAGAAAG 961
Score = 1341 bits (726), Expect = 0.0
Identities = 801/837 (96%), Gaps = 5/837 (1%)
Strand=Plus/Plus
Query 959 AGAAAGTTGAGAAGAAGAAGAGTAGTAAGAAATTAGAAT-GTTGCTTTTCGTTGGATgaa 1017
|||||||||||||||||||||||||||||| |||||||| || || ||||||||||||||
Sbjct 1133 AGAAAGTTGAGAAGAAGAAGAGTAGTAAGAGATTAGAATGGTGGC-TTTCGTTGGATGAA 1191
Query 1018 gagaaggagaaggggaagaagaagaagaagcggagaatggtgagagagtggtggaaggaT 1077
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1192 GAGAAGGAGAA-GGG--GAAGAAGAAGAAGCGGAGAATGGTGAGAGAGTGGTGGAAAGAT 1248
Query 1078 GAGTATCGGAAAGAGCTTGCTAAGCGAATGAAGAAGATGAAGAAGAAGAAAACTTTGGAG 1137
|||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1249 GAGTATAGGAAAGAGCTTGCTAAGAGAATGAAGAAGAAGAAGAAGAAGAAAACTTTGGAG 1308
Query 1138 TCTGAGTTTTATAGTGATGATGTGAGTGGAAGTGTGGATCAAAGGCGGGGCGGGGATGAA 1197
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1309 TCTGAGTTTTATAGTGATGATGTGAGTGGAAGTGTGGATCAAAGGCGGCACGGGGATGGA 1368
Query 1198 GAATTGTATAGGAAGAAAAGAAGAGGTGGTAGTAGTAACAGTATAGGAAGTAGCATAGAT 1257
||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1369 GAAGTGTATAGGAAGAAAAGAAGAGGTGTTAGTAGTAACAGTATAGGTAGTAGCATAGAC 1428
Query 1258 TGGTGGTTAGATGGGCTAAGCGGTGAACAATGGAGAGCACGGCGTAGAAACAGTCAAGAT 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 TGGTGGTTAGATGGGCTAAGCGGTGAACAATGGAGAGCACGGCGTAGAAACAGTCAAGAT 1488
Query 1318 TCAGTTAAGAGTTGCGGAGTCAGTAGCACGCCGAGCATGAGAGGGACAATGTGCTACGTT 1377
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1489 TCAGTTAAGAGTTGCGGAGTCAGTAGCACGCCGAGCATGAGAGGGACGATGTGCTATGTT 1548
Query 1378 GCTCCTGAGTGTTGTGGTAATAACATAGATGATGTGTCTGAAAAATCTGATGTGTATAGC 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 GCTCCTGAGTGTTGTGGTAATAACATAGATGATGTGTCTGAAAAATCTGATGTGTATAGC 1608
Query 1438 TACGGAGTTTTGTTGTTAGTCTTGGTTTCAGGAAGGCGGCCGCTGGAAGTAACTGGACCC 1497
|| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1609 TATGGAGTTTTGTTGTTAGTCCTGGTTTCAGGACGGCGGCCGCTGGAAGTAACTGGACCC 1668
Query 1498 GCGTCTGAGATCATGCAGCGTGCTAATCTCATGTCGTGGGCGAGGAAGCTTGCGAGAAGA 1557
|||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1669 GCGTCTGAGATCATGCTGCGTGCAAATCTCATGTCGTGGGCGAGGAAGCTGGCGAGAAGA 1728
Query 1558 GGGAGACTCGGTGATCTGGTAGATGAAAAGCTGCAGTTGTTAGACAAAGAACAAGCGGTT 1617
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1729 GGGAGACTCGGTGATCTGGTGGATGAAAAGCTGCAGTTGTTAGACCAAGAACAAGCGGTT 1788
Query 1618 TTGTGCATTAAGGTGGCTTTGCAGTGTCTGCAAAAATCCCCGGTTTCACGACCTTCAATG 1677
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1789 TTGTGCATTAAGGTGGCTTTGCAATGTCTGCAAAAATCACCGGTTTCACGACCTTCAATG 1848
Query 1678 AAAGATGTTTTAGAAATGCTTAGAGGAGCGATGAGCCCACCGGATTTGCCTACAGAGTTC 1737
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||
Sbjct 1849 AAAGATGTTTTAGAAATGCTTACAGGAGCGATAAGCCCACCGGATTTGCCTACAGAATTC 1908
Query 1738 TCACCATCACCGCAGACTCGCTTCCCGTTCAAGACACGAAGGAAGCAGAATCGGTAG 1794
|||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||
Sbjct 1909 TCACCATCACCGCAGACTCGGTTCCCGTTCAAGGCACGAAGGAAGCAGAATCGATAG 1965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88754563560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5