BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357417
Length=2922
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51800.1 | Symbols: | Protein kinase superfamily protein | ... 4362 0.0
> AT5G51800.1 | Symbols: | Protein kinase superfamily protein
| chr5:21048191-21052012 FORWARD LENGTH=3151
Length=3151
Score = 4362 bits (2362), Expect = 0.0
Identities = 2755/2941 (94%), Gaps = 41/2941 (1%)
Strand=Plus/Plus
Query 1 ATGGGTGAGACAACAAAAGGAGATGCTACAAAACCATCACCGAATCAAATCTCCTCACCT 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 127 ATGGGTGAGACAACAAAAGGAGATGCTACAAAACCACCACCGAATCAAATCTCCTCACCT 186
Query 61 AAAGATTCTtcactcgatcaccaagcaccaaacccatcactcctccatcatcaccaccac 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 187 AAAGATTCTTCACTCGATCACCAAGCACCAAACCCATCACTCCTCCATCATCACCATCAT 246
Query 121 caccaccaATCTTTCCTCCCTTCTCCGATCTTCATACCCACCGTCTCTTCTCCCGGAGCT 180
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 247 CACCACCAATCTTTCCTCCCTACTCCGATCTTCATACCCACCGTATCTTCTCCCGGAGCT 306
Query 181 CCGGTAATCCCCAAACGACCACGTTTCAGCACTTCCGGTGGTCTCTCTCCTCCTCAATGG 240
||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 307 CCGGTCATCCCCAAAAGACCACGTTTCAGCACTTCCAGTGGTCTCTCTCCTCCTCAATGG 366
Query 241 AAAGCCTTGCCGTCTCCTTCTACCGTCCCAACCGCCTCCACAATCTCTTCATCACCGACA 300
|||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 367 AAAGCCTTGCCGTCTCCTTCCACCGTCCCAACGGCTTCCACAATCTCTTCATCACCGACA 426
Query 301 CCTTCCACCGCCGTGGTAACAGCTTCTTCCACCGAAACCGCCGGATCTTCACCCCCGGGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 427 CCTTCCACCGCCGTGGTAACAGCTTCTTCCACCGAAACCGCCGGATCTTCACCACCGGGT 486
Query 361 CAAGAAGCGACCAACAGTGAAAaacaacaacaacaacaacCTAAACCGGAGTCATTTCAA 420
|||||||||||||||||||||||||||||||||| ||| | || |||||| ||||||
Sbjct 487 CAAGAAGCGACCAACAGTGAAAAACAACAACAAC--CAA---AGAC-GGAGTCGTTTCAA 540
Query 421 CATAAATTCAGAAAAGGTAAGTACGTTAGCCCCGTGTGGAAACCAAACGAGATGCTATGG 480
|||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 CATAAATTCAGAAAGGGCAAGTACGTTAGCCCAGTGTGGAAACCAAACGAGATGCTATGG 600
Query 481 CTAGCAAGAGCCTGGAGAGCCCAGTACCAAAACCAAGTAACCGGGTCCGGATCCGGATCC 540
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||
Sbjct 601 CTAGCAAGAGCCTGGAGAGCCCAGTACCAAACCCAAGGAACCGGGTCCGGATCCGGGTC- 659
Query 541 GGTTCGGGCGAAGGAAGAGGCAAAACCCGTGCTGAAAAAGACAGGGAAGTAGCCGAGTAT 600
||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 660 GGT-CG----AAGGAAGAGGCAAAACCCGTGCTGAAAAAGACAGGGAAGTAGCTGAGTAT 714
Query 601 CTAAACCGACACGGTATAAACCGGGACTCAAAAATCGCCGGTACGAAATGGGACAACATG 660
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 715 CTAAACCGACACGGTATAAACCGGGACTCTAAAATCGCCGGTACGAAATGGGACAACATG 774
Query 661 CTTGGTGAGTTTAGGAAAGTGTATGAATGGGAAAAATGCGGAGATCAGGACAAATACGGT 720
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 775 CTTGGTGAGTTTAGGAAAGTGTATGAATGGGAAAAATGTGGAGATCAGGACAAATACGGT 834
Query 721 AAGAGTTACTTCAGGCTCTCTCCTTACGAGAGGAAGCAGCATCGACTTCCCGCGTCTTTT 780
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 835 AAGAGTTACTTCAGGCTCTCTCCTTACGAGAGAAAGCAACATCGACTTCCCGCGTCTTTT 894
Query 781 GACGAAGAAGTCTATCAAGAATTGGCTCTTTTCATGGGTCCACGTGTCAGAGCTCCGACT 840
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 895 GACGAAGAAGTCTATCAAGAACTAGCTCTTTTCATGGGTCCACGTGTCAGAGCTCCGACT 954
Query 841 ATTAACCGCGGCGGCGGTGGCGGAGCTACGGTAACTGTAGCCTCAACGCCTCCATCTGTT 900
|||||||| || |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 955 ATTAACCGTGGTGGCGGTGGCGGAGCTACGGTAACTGTTGCCTCAACGCCTCCGTCTGTT 1014
Query 901 GAGGCGCTTCCTCCTCCTCTTTATCCAGCATTGATGACGTCGCGAGACGAATATGATATT 960
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1015 GAGGCGCTTCCTCCTCCTCTTTATCCAGCATTGATGACTTCAAGAGACGAATATGATATT 1074
Query 961 GATAATAACCCAATCTCTTCCATTGGAAGAGGGAAGCGTTTGGCATTATCACTACTTGGA 1020
|| || ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1075 GAAAACAACCCTATCCCTTCCATTGGAAGAGGGAAGCGTTTGGCATTATCACTAGTTGGA 1134
Query 1021 GATGATCA---TCCTCAATATCCGTATTCACACAACATTGCTAGAGGATCAGGTTTATTC 1077
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1135 GATGATCACCATCCTCAATATCCGTATGCACACAACATTGCTAGAGGATCAGGTTTATTC 1194
Query 1078 TCTAATAAATCATTATACAATCCtttttttGAGATGATTCCTTCTTCCTCTTCTTCGTCT 1137
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1195 TCTAATAAATCATTATACAATCCCTTTTTTGAGATGATTCCTTCTTCTTCTTCTTCGTCT 1254
Query 1138 TCCTCACTGAAAGATCTTCGCCGTATTGGAAAAATACGGCTAACATGGGAGGAATCGGTT 1197
||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1255 TCCTCGCTGAGAGATCTTCGCCGTATTGGAAAAATACGGCTAACTTGGGAGGAATCGGTT 1314
Query 1198 AACTTGTGGGCTGAAGAAGGAGATGTTGATTATGGGAGAATTAGGGTTAGTGGTTCGAGT 1257
|||||||||||||||| || || ||||||||||||||||||||||||||||| ||||||
Sbjct 1315 AACTTGTGGGCTGAAGGAG-AG--GTTGATTATGGGAGAATTAGGGTTAGTGGGTCGAGT 1371
Query 1258 TTTTTGAATGCGGATGAGCTCACATACTTGGATGATTCCATGGTGGCTTGTAAAATGGAA 1317
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1372 TTCTTGAATGCGGATGAGCTCACATACTTGGATGATTCCATGGTGGCTTGTACAATGGAA 1431
Query 1318 TCCTTCGAAGATGGACCTCTCAAGGGATTTTCTTTGGATAAATTCATTTCTGGTCAACAT 1377
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1432 TCCTTCCAAGATGGACCTCTCAAGGGATTTTCTTTGGATAAATTTATTTCTGGTCAACAT 1491
Query 1378 CTTAAAGTCTTTGGAAGACAAAGGTCAACTTCATCATCTGCTCCTTCACCTTCAGTAAAT 1437
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1492 CTTAAAGTCTTTGGGAGACAAAGGTCAACTTCATCATCTGCTCCCTCACCTTCAGTAAAT 1551
Query 1438 GTGGCAGGTGTGTTTGATCGACCTCAGCTTCAACTCTCAGAACCCATTTATAAATCAATA 1497
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1552 GTGGCTGGTGTGTTTGATCGACCTCAGCTTCAACTTTCAGAACCCATTTATAAATCAATA 1611
Query 1498 TCAACATTGGAGTTCCAAGACCCATCGGAGCATTTCTTGAGTAAATTGCGTGTGCCAGCA 1557
|||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct 1612 TCAACATTGGAGTTCCAAGACCCATCGGAGCATTGCTTAAGTAAATTGCGAGTGCCAGCC 1671
Query 1558 GGAAA-CATTCCGAGTTTATTTGAGCTCGCACGGTATCTTCAAGAACCACCGCCGGAAAA 1616
||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 GGAAATC-TTCCCAGTTTATTTGAGCTCGCACGGTATCTTCAAGAACCACCGCCGGAAAA 1730
Query 1617 TCTTCGGTTTCCTCTCCGACCAGACGTCTACAAAGACTTGCCGTCC-GGAAAAGAGCTCT 1675
||| |||||||||||||| |||||||||||||||||||||||| | |||||||||||||
Sbjct 1731 TCTCCGGTTTCCTCTCCGGCCAGACGTCTACAAAGACTTGCCG-CAAGGAAAAGAGCTCT 1789
Query 1676 TCTTCTCCATCTCCTCCACCGAGCTACTAGATTGTAGAGCAATCACATATGATGTCATCG 1735
||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| |
Sbjct 1790 TCTTCTCCATCTCCTCCACTGAGCTACTAGATTGTAGAGCAATCACATACGACATCATTG 1849
Query 1736 GCCCCATAATGTCCCGCTTAAACCCTAATACCGGTTTCGTCATCTCGAGCAAAGACTCCC 1795
||||||||||||||||||||||| |||||| || ||||| |||||||| |||||||| |
Sbjct 1850 GCCCCATAATGTCCCGCTTAAACTCTAATAATGGCTTCGTTATCTCGAGTAAAGACTCGC 1909
Query 1796 TGATCTCGCTTTGGGACGACTGCGTTAACCGGATGGTTTCAAAGTTTTGTGAAATGGTGG 1855
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1910 TGATCCCGCTTTGGGACGACTGCATTAACCGGATGGTTTCAAAGTTTTGTGAAATGGCGA 1969
Query 1856 TTTTGCGTAAACCAGACTCGTCGTCTTGGATTGAAAACGTACAAGATCAGTGGCCAAACG 1915
||||||||||||| || ||||| ||||| || ||||| |||||| |||||||||||||||
Sbjct 1970 TTTTGCGTAAACCGGATTCGTCTTCTTGCATAGAAAATGTACAACATCAGTGGCCAAACG 2029
Query 1916 TGATGGGAT-TCGTAAAAGGATTTGGCTTATGGAGAGGAGAAGAAACTGATAAGGTACGG 1974
| || |||| | || |||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 2030 TAATCGGATAT-GTTAAAGGATTTGGCTTATGGAGAGGAGAAGAAGCTGACAAGGTACGA 2088
Query 1975 GAAGGGGCAGCTGATCCTTCTTCTCTATTGGTCGAGAAGATTCTTTGGTCGTACAACGAT 2034
||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2089 GAAGGTGCTGCTGATCCTTCTTCTCTATTGGCCGAGAAGATTCTTTGGTCGTACAACGAT 2148
Query 2035 CTTCCATACATTCTTGGATATCACGCAATAGGGTTCATTGTAACATTCTGCGCTTTGAGT 2094
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2149 CTTCCATATATTCTTGGATATCACGCAATAGGGTTCACCGTAACATTCTGCGCTTTGAGT 2208
Query 2095 CTATCATCAGAAGATCGAGTGATCTGCACCGATCTTTATTCATTCAACGTCTCATCACCG 2154
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2209 CTATCATCACAAGATCGAGTGATCTGCACCGATCTTTATTCATTCAACGTCTCGTCACCG 2268
Query 2155 TCCGATCGAATCAAGGCCTTGGTTCCTTGTTACCGTCTAGCTTCCCTTATACCTTTGCTT 2214
|| ||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 2269 TCGGATAGAATCAAGGCCTTGGTTCCTTGTTACCGTCTCGCTTCCCTTTTACCTTTGCTT 2328
Query 2215 GCAGATCGGTGTACTACGAGGCCTTTATGCTACAACGACTTCGAGAGAATCGATCATGGA 2274
||||||||||| ||||||||||||| ||||||||| |||||||||||||| |||| ||||
Sbjct 2329 GCAGATCGGTGCACTACGAGGCCTTCATGCTACAATGACTTCGAGAGAATAGATCGTGGA 2388
Query 2275 GATTATGTGACCGAAGT-AACGCCTAACACGGTGACTAAG-TATTACTCAAGCAAGCGAA 2332
|||||||||||||| || ||||||| | |||||||| ||| |||||||||||||| |||
Sbjct 2389 GATTATGTGACCGA-GTTAACGCCTCATACGGTGAC-AAGGTATTACTCAAGCAAAAGAA 2446
Query 2333 AATGGATGGGTGTTAAAGGAATCTACGATTTTCTCGACCAAAGAGTTCCACACGCGGAGC 2392
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2447 AATGGCTGGGTGTTAAAGGAATCTACGATTTTCTCGACCAAAGAGTTCCACACGCGGAGC 2506
Query 2393 ATTTGGATAGGGCAAGCGAGAAAGATCTCTCGTTGAGTTTTAAGCCACGTGGAATCAGAG 2452
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2507 ATTTGGATATGGCAAGCGAGAAGGATCTCTCGTTGAGTTTTAAGCCACGTGGAATCAGAG 2566
Query 2453 TCAAACCACAAAACATTGACCAGCTCATCGACTCGCTGATGTGTGTGAGTAAAGCGCTCG 2512
||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2567 TCAAACCTCGAAACATTGACCAGCTCATCGACTCGCTGATGTGTGTGACTAAAGCGCTCC 2626
Query 2513 TTGCACTTCACGACCTTTCTTTCATGCATCGTGACATGGGATGGCATAATGTAATGAGAA 2572
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2627 TTGCACTTCACGACCTTTCTTTCATGCATCGTGACATGGGATGGGATAATGTAATGAGAA 2686
Query 2573 GCACGGCGACGAT-A-A-CAACAACTGACACGGATTGGTTTGTTTGCGGGTTTGATGCTG 2629
|||||||||||| | | |||||||||||||||||||||||||||| |||||||| ||||
Sbjct 2687 GCACGGCGACGACCACAACAACAACTGACACGGATTGGTTTGTTTGTGGGTTTGACGCTG 2746
Query 2630 CTGTTGAGGCCCCGCAGCTTAACCCGCACCGCCCTGTGGCCAAAGCAGTTATGG-AG-GA 2687
| || |||||||| |||||||||||||||||||| | || ||||| || | | | ||
Sbjct 2747 CGGTCGAGGCCCCACAGCTTAACCCGCACCGCCCCGCGGACAAAGTGGT-A-GACAATGA 2804
Query 2688 GGA-AG--AGGA-G--CGTGGGAGACACGCGCCGGAGATGGAGAGAGGATTGCATGCAGT 2741
||| || |||| | ||||||||| |||||||||||||||||||||| |||||||| ||
Sbjct 2805 GGAGAGGGAGGATGAACGTGGGAGATACGCGCCGGAGATGGAGAGAGGCTTGCATGCGGT 2864
Query 2742 GAAAGTGGATGTGTGGGGAGTGGGTTATATGATAAAGACTTGTGGATTAAGTAATGTACC 2801
|||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 2865 GAAAGTAGATGTTTGGGGAGTGGGTTATATGATAAAGACGTGTGGATTGAGTAATGTACC 2924
Query 2802 AAAGATATTGAGAGACCTTCAGGGGAAGTGTTTGGAACCTAACCAAGAGAACCGACCGAC 2861
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2925 AAAGATGTTGAGAGACCTTCAGGGGAAGTGTTTGGAACCAAACCAAGAGAACCGACCGAC 2984
Query 2862 CGCAGCTGATTGCTTCCACCACCTTCTCCAGGTTCAATCTGCCAGTACATCGTCGTATTA 2921
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2985 TGCAGCTGATTGCTTCCACCACCTTCTCCAGGTTCAATCAGCCAGTACATCGTCGTATTA 3044
Query 2922 G 2922
|
Sbjct 3045 G 3045
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 145233299985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5