BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357440
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52010.1 | Symbols: | C2H2-like zinc finger protein | chr5:... 1507 0.0
> AT5G52010.1 | Symbols: | C2H2-like zinc finger protein | chr5:21121483-21122985
REVERSE LENGTH=1503
Length=1503
Score = 1507 bits (816), Expect = 0.0
Identities = 955/1021 (94%), Gaps = 14/1021 (1%)
Strand=Plus/Plus
Query 1 ATGGTAAGAAACAAAGAAGGTATCTTTGCACCAAAGGAGAAGAAAGTTGTAGTCTTGTGG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 350 ATGGTAAGAAACAAAGAAGGTATCTTTGCACCAAAGGAGAAGAAAGTTGTAGTCTTATGG 409
Query 61 GACTTAGACAACAAACCACCACGAGGTCCACCGTACGAAGCAGCAACAGCTCTCCGTAAA 120
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 410 GACTTAGACAACAAACCACCACGAGGTCCACCATACGAAGCCGCAACAGCTCTCCGTAAA 469
Query 121 GTGGCGGAGAAACTCGGCCGAGTCGTTGAAATCTCCGCTTACGCAAATCGTCATGCTTTT 180
|| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 470 GTCGCTGAGAAACTCGGCCGAGTCGTCGAAATCTCCGCTTACGCAAATCGTCATGCTTTT 529
Query 181 ATCCATTTACCTCATTGGGTCGTCGAAGAGAGACGTGAAAGGAGGAATCTTGATTTCATG 240
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 530 ATCCATTTACCTCATTGGGTCGTCGAAGAGAGACGAGAAAGGAGGAACCTTGATTTCATG 589
Query 241 GAGAGGAAAGGAGAAGTGACTCCAATTGATCCCTACATTTGTGGTGTTTGTGGTCGGAAG 300
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 590 GAGAGGAAAGGAGAAGTGACTCCAATTGATCCGTACATTTGTGGTGTTTGTGGTCGCAAG 649
Query 301 TGTAAAACCAATCTTGATTTGAAGAAACATTTCAAGCAGCTTCATGAGAGGGAGAGACAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 TGTAAAACCAATCTTGATTTGAAGAAACATTTCAAGCAGCTTCATGAGAGGGAGAGACAG 709
Query 361 AAGAAAGTGAATAGGATGAGATCTTTGAAAGGTAAGAAGCGTCAGAAGTTTAAAGAACGT 420
|||||||| ||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 710 AAGAAAGTTAATAGGATGAGATCTTTGAAAGGTAAGAAACGTCAGAAGTTTAAGGAGCGT 769
Query 421 TATGTTTCAGGGAATGAGAAGTATAATGAGGCGGCGAGGAGGTTGTTGACTCCTAAAGTT 480
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 770 TATGTTTCAGGGAATGAGAAGTATAATGAGGCTGCGAGGAGTTTGTTGACTCCTAAAGTT 829
Query 481 GGATATGGCTTAGAGGCGGAGCTACGTCGAGCGGGGGTTTATGTGAAGACGGTGGAGGAT 540
|||||||| |||||||| |||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 830 GGATATGGTTTAGAGGCTGAGCTACGTCGAGCAGGGGTTTATGTTAAGACGGTTGAGGAT 889
Query 541 AAGCCACAGGCGGCGGATTGGGCGGTGAAGAGACAGATACAGCATTCGATGACGAGGGGG 600
||||| ||||| |||||||||||||| |||||||||||||| ||||| ||||| || |||
Sbjct 890 AAGCCTCAGGCTGCGGATTGGGCGGTTAAGAGACAGATACAACATTCAATGACTAGAGGG 949
Query 601 ATTGATTGGTTGGTTTTGGTATCGGATGATAAGGATTTTTCGGATATGTTGAGGAAGGCT 660
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 950 ATTGATTGGTTGGTTTTGGTGTCGGATGATAAGGATTTTTCTGATATGTTGAGGAAAGCT 1009
Query 661 AGGGAGGCTGATCTTGGGACTTTGGTGGTTAGTGATAGGGATAGAGCGTTGGGACGGCAT 720
|| ||||||||||||||||||||||| |||||||||| ||||||||| |||||| |||||
Sbjct 1010 AGAGAGGCTGATCTTGGGACTTTGGTTGTTAGTGATATGGATAGAGCATTGGGAAGGCAT 1069
Query 721 GCTGATTTGTGGGTGCCTTGGAGTGGAGTTGAGAATGGAGAGATTGGGGAGAAGGATTTG 780
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1070 GCTGATTTGTGGGTGCCTTGGAGTGGTGTTGAGAAGGGAGAGATTGGTGAGAAGGATTTG 1129
Query 781 ATTCCGGGGAAGAGACCGCGGTTTGAGGAGGATGCGGAGAGTGAGGTGGGATTTAGCGGT 840
||||||||||||||||| ||||||||||||||| || ||| || |||| | |||
Sbjct 1130 ATTCCGGGGAAGAGACCAAGGTTTGAGGAGGATG---AG-GTG-GG----ATTTGGTGGT 1180
Query 841 GGA-GATGAGTTGTTTTCGTTGTCTTATGATGAGGATGAGAGGGCGGAGATGACGGTGGA 899
| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1181 A-ATGATGAGTTGTTTTCGTTGTCGTATGATGAGGATGAGAAGGCGGAGATGACGGTGGA 1239
Query 900 GAGTGATGGATTTGGGAGGTTTAATGTATCGGCGTTTTCGGAAGATGAATGGGTAGAGGA 959
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1240 GAGTGATGGGTTTGGGAGGTTTAATGTATCGGCGTTTTCGGAAGATGAATGGGTGGAGGA 1299
Query 960 TGAAGGAGACTTTGCATTGAGTGATAGT-G--ATGATGATAGTGACGATGAGCTCTTCTG 1016
|||||||||||||| |||||||||||| | ||||||||||||| |||||||| |||||
Sbjct 1300 TGAAGGAGACTTTGTGTTGAGTGATAGTAGTGATGATGATAGTGATGATGAGCTTTTCTG 1359
Query 1017 A 1017
|
Sbjct 1360 A 1360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5