BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357447
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52060.1 | Symbols: ATBAG1, BAG1 | BCL-2-associated athanoge... 721 0.0
> AT5G52060.1 | Symbols: ATBAG1, BAG1 | BCL-2-associated athanogene
1 | chr5:21152214-21154244 REVERSE LENGTH=1767
Length=1767
Score = 721 bits (390), Expect = 0.0
Identities = 481/521 (92%), Gaps = 21/521 (4%)
Strand=Plus/Plus
Query 1 ATGATGAAGATGATGAGAAACAAACCGACAAATCTTCCGACGGC-GGT-CGGC----GGT 54
|||||||||||||||||||||||||||||||||||||||||||| ||| | | ||
Sbjct 504 ATGATGAAGATGATGAGAAACAAACCGACAAATCTTCCGACGGCGGGTATGACTAATGGC 563
Query 55 GGTAGAGGTT----C--C---------GGCGGCGGCAGGGAGTCAGGCGGTCATGATTGG 99
|||||||||| | | ||||||||||||||||||||||||| ||||| |
Sbjct 564 GGTAGAGGTTCCGGCGGCGGTGGTGGTGGCGGCGGCAGGGAGTCAGGCGGTCGTGATTTG 623
Query 100 GAAATGAGACCTGGTGGTATGTTGGTTCAGAAACGTAACCCGGATTTGGATCCTGTTGGA 159
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 624 GAAATTAGACCTGGTGGTATGTTGGTTCAGAAACGTAACCCGGATTTGGATCCTGTCGGA 683
Query 160 GCTCCACCACCGCCGTTGATCAGAGTTAGGATCAAGTACGGTGCCGTGTACCATGAGATC 219
|||||||||| ||| ||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 684 CCTCCACCACCACCGATGATCAGAGTTAGAATCAAGTACGGTGCCGTCTACCATGAGATC 743
Query 220 AATATTAGTCCTCAAGCTTCATTTGGGGAGCTAAAGAAGATGTTGACTGGACCAACGGGT 279
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 744 AATATTAGTCCTCAAGCTTCTTTTGGGGAGCTAAAGAAGATGTTGACTGGACCAACGGGT 803
Query 280 ATTCATCATCAAGATCAGAAGCTAATGTATAAAGATAAAGAGAGGGATTCGAAGGCGTTT 339
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 ATTCATCATCAAGATCAGAAGCTAATGTATAAAGATAAAGAGAGGGATTCGAAGGCGTTC 863
Query 340 CTCGATGTTTCGGGAGTGAAAGATAAATCCAAGATGGTGCTTATCGAAGATCCGATTAGC 399
||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| |||||
Sbjct 864 CTCGATGTTTCGGGAGTGAAAGATAAATCTAAGATGGTGCTTATAGAAGACCCGCTTAGC 923
Query 400 CAAGAGAAACGGTTTTTGGAGATGAGGAAGATTGCTAAAACCGAAAAGGCGTCGAAAGCG 459
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 924 CAAGAGAAACGGTTTTTGGAGATGAGGAAGATTGCTAAAACCGAAAAGGCGTCTAAAGCG 983
Query 460 ATATCGGATATTAGCCTTGAAGTTGATAGGCTCGGCGGACG 500
|||||||||||||||||||||||||||||||||||||||||
Sbjct 984 ATATCGGATATTAGCCTTGAAGTTGATAGGCTCGGCGGACG 1024
Score = 701 bits (379), Expect = 0.0
Identities = 458/494 (93%), Gaps = 13/494 (3%)
Strand=Plus/Plus
Query 568 ATGGTAATTAAGAAAGGAGGGAAGATTGCGGAGAAAGATCTTGTAACGGTTATCGAATTG 627
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 ATGGTAACTAAAAAAGGAGGGAAGATTGCGGAGAAAGATCTTGTAACGGTTATCGAATTG 1100
Query 628 TTGATGAATGAGTTGATAAAGTTGGATGCGATTGTGGCTGAAGGAGATGTGAAGCTACAA 687
|||||||||||||||| ||||||||||||||||| |||||||||||||| ||| |||||
Sbjct 1101 CTGATGAATGAGTTGATTAAGTTGGATGCGATTGTAGCTGAAGGAGATGTCAAGTTACAA 1160
Query 688 AGAAAGATGCAGGTGAAGAGAGTGCAGAATTATGTCGAAACACTCGATGTCTTGAAGGTG 747
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1161 AGAAAGATGCAGGTGAAGAGAGTGCAGAATTATGTGGAAACACTCGATGCCTTGAAGGTG 1220
Query 748 --AAA----ATGGCAAATGGGCAACAGAAACAGT-TAG--GTGCTCAGCGACTTGCACCG 798
||| ||||| ||||||||||||||||||| || ||||||| |||||||||||
Sbjct 1221 AAAAACTCCATGGCTAATGGGCAACAGAAACAGTCAAGTACTGCTCAGAGACTTGCACCG 1280
Query 799 ATTCAAGAACATAACAATGAAGAGAGACAAGAACAGAAACCGATACAATCGCTCATGGAC 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1281 ATTCAAGAACATAACAATGAAGAGAGACAAGAACAGAAACCGATACAATCGCTCATGGAC 1340
Query 859 ATGCCGATACAATACAAAGAGAAGAAGCAAGAGATTGAAGAGGAGCCAAGGAATTCAGGG 918
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1341 ATGCCGATACAATACAAAGAGAAGAAGCAAGAGATTGAAGAGGAGCCTAGGAATTCAGGG 1400
Query 919 TCAGGACCATTTGTGTTAGATTCTTCTACTAAATGGGAAACATTTGATCATCATCCTGCG 978
||||||||||||||||||||||||| |||||||||||||||| ||||||||||| | |
Sbjct 1401 GAAGGACCATTTGTGTTAGATTCTTCTGCTAAATGGGAAACATTCGATCATCATCCCGTG 1460
Query 979 ACGCCATTGAGTTCGGCTACTGC-AAATAATCAA-GCGATCCCGCCCAGGTTCAATTGGG 1036
||||||||||| ||| ||||||| ||| ||| || ||||||||||||||||| |||||||
Sbjct 1461 ACGCCATTGAGCTCGACTACTGCGAAA-AAT-AACGCGATCCCGCCCAGGTTTAATTGGG 1518
Query 1037 AATTCTTTGATTGA 1050
||||||||||||||
Sbjct 1519 AATTCTTTGATTGA 1532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51490000675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5