BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357483
Length=2250
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52410.2 | Symbols: | INVOLVED IN: biological_process unkno... 3181 0.0
> AT5G52410.2 | Symbols: | INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures;
EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s:
S-layer homology domain (InterPro:IPR001119); BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23890.1);
Has 35333 Blast hits to 34131 proteins in 2444
species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi
- 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink). | chr5:21275956-21279443 FORWARD LENGTH=2461
Length=2461
Score = 3181 bits (1722), Expect = 0.0
Identities = 2108/2288 (92%), Gaps = 52/2288 (2%)
Strand=Plus/Plus
Query 1 ATGGCGACATGGACACCAAGCTCTCTCCAGCTCAGAATTGCCCTAAATCACGGTAGCTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 38 ATGGCGACATGGACACCAAGCTCTCTCCAGCTCAGAATTGCCCTAAATCACGGTATCTTC 97
Query 61 AAAGCTCCGGCGAGAGCAAAGATGACAAAGCTCAGTCGTCGTTTCCGGATGTCATGCGTT 120
|||||||||| |||||| |||||||| ||||||||||||||| |||| || ||||||||
Sbjct 98 AAAGCTCCGGAGAGAGCGAAGATGACCAAGCTCAGTCGTCGTCTCCGTATATCATGCGTC 157
Query 121 GCTCAGAACGCAGAATTGGGTGGCGATTTTGGTGAGAGTAATGGGTCGGATCGTTTTCGT 180
|| ||||||||||| ||| |||||| ||||||||||| ||||||||||||||||||
Sbjct 158 GCGCAGAACGCAGAGCCAGGTCGCGATTCGGGTGAGAGTAACGGGTCGGATCGTTTTCGT 217
Query 181 GGGTGGGCTGATTCGGGAGACGATGAGAATACTGTCGATTCTCGCGGTGGTGATTGGTTT 240
||||||||||||||||||||||||||||| | ||||||||||||| |||||||||
Sbjct 218 GGGTGGGCTGATTCGGGAGACGATGAGAACA------ATTCTCGCGGTGGCGATTGGTTT 271
Query 241 AAAGGAACCTTGTTATCTGGAGTGGCTGGAATGGTTCTGTTCGTTGGGCTAACTTACGCA 300
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 272 AAAGGAACCTTGTTATCTGGAGTTGCTGGAATGGTTTTGTTCGTTGGGCTAACTTACGCA 331
Query 301 GCTTTATCTTTCAAGCGCAATGTTTTAAGACCAAAAGTACAAGTGATGGTGACCACGGTT 360
|||||||||| ||| |||||||| ||||||||||||||| |||||||||||||||| |||
Sbjct 332 GCTTTATCTTCCAAACGCAATGTCTTAAGACCAAAAGTAGAAGTGATGGTGACCACAGTT 391
Query 361 ACTAAAAGTTCAAGTGATCAAATCAGCACGGGTGATAATGAAGGAAATATTGTCA--AGG 418
||||||||||||| ||||||||||||||||| ||| ||||||||||||||||| | ||
Sbjct 392 ACTAAAAGTTCAATTGATCAAATCAGCACGGATGAGAATGAAGGAAATATTGTGACTAG- 450
Query 419 ATCAAGATAAGCAGGAAAGCTATAGAGA-TTCTC----C---A-GTT--TT-A--T-CAC 463
||||||||| |||||||||||||||| ||| | | | ||| || | | |||
Sbjct 451 -TCAAGATAACCAGGAAAGCTATAGAGCGTTCCCTTTTCTGGATGTTAGTTTAGATTCAC 509
Query 464 CAG----AT----G-AC-AAA--GAT-TTGGTGTCGAAGTCCGCGTCTACAAGCAAAGTA 510
|| || | | ||| ||| ||| ||| || ||| ||||||| || |||| |
Sbjct 510 AAGTTTTATCTCCGGATGAAATAGATGTTGC-GTCAAAATCCACGTCTACTAGGAAAG-A 567
Query 511 -AATGATGAGG-GGAACAAAGCATCAGAAAG-TCCAGCTGAGAAATACACATTATCGA-A 566
||||| |||| ||| |||||||| | ||| || ||| |||| |||||||| ||| | |
Sbjct 568 CAATGAGGAGGCGGAG-AAAGCATCGGTAAGCTC-AGCGGAGAGATACACATCATCTACA 625
Query 567 GGAGTTGGATGGAGTAGATACACATACCTCTCTAACCCCATACAAAAAGCAGAAAACTCG 626
| || ||||||||||||||||||||||||||| || |||| || ||||||||||| | ||
Sbjct 626 G-AGCTGGATGGAGTAGATACACATACCTCTCAAATCCCAAACGAAAAGCAGAAAGCCCG 684
Query 627 TAGTTATACAGGAAGACCTGCTCCTTCCACAGTTCCACAAGTAAATCCTGTAGAACCTAT 686
|||||||||||| |||||||||||| ||||||||||||||| || || || |||||||
Sbjct 685 CCGTTATACAGGAATACCTGCTCCTTCTACAGTTCCACAAGTAGATTCTTTAAAACCTAT 744
Query 687 ATTTCCAACGGTTGTGGACCCTGTTCAAAGTCAAATATTTTCAGCTTTACAAGCTTTAAA 746
||||||||||||||||| || |||||||||||||| ||| |||||||||||||||||||
Sbjct 745 CTTTCCAACGGTTGTGGATCCAGTTCAAAGTCAAATGTTTGCAGCTTTACAAGCTTTAAA 804
Query 747 GGTTATTGAATCTGATGCTCTGCCTTACGATTTATGTACACGCCGTGAATTCGCTCGGTG 806
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 805 GGTTATTGAATCCGATGCTCTGCCTTACGATTTATGTACACGCCGTGAATTCGCTCGTTG 864
Query 807 GGTGGTTTCTGCAAGCAATACTCTATCGAGGAACTCAGCATCAAAAGTATATCCTGCCAT 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 GGTGGTTTCTGCAAGCAATACTCTATCGAGGAACTCAGCATCAAAAGTATATCCTGCCAT 924
Query 867 GTACATAGAGAATGTTACTGAACTTGCATTTGATGATATTACACCTGAAGATCCTGATTT 926
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 GTATATAGAAAATGTTACTGAACTTGCATTTGATGATATTACACCTGAAGATCCTGATTT 984
Query 927 TCCATTCATTCAAGGTTTGGCAGAGGCAGGGCTTATCTCAAGCAAACTCTCTAACCACAA 986
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 985 TCCATTCATTCAAGGTTTGGCAGAGGCAGGACTTATCTCAAGCAAACTCTCTAACAACAA 1044
Query 987 CATGCCTTGTTCTGAGAGCAGTCGGTTTACGTTCTCCCCAGAAAGTCCTCTAACCCGTCA 1046
||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1045 TATGCCTTCTTCTGAGAGCAGTCGGGTTACGTTCTCCCCAGAAAGTCCTCTAACACGTCA 1104
Query 1047 GGATTTATTGAGCTGGAAGATGGCTTTGGAATTTCGACAGCTCCCAGAAGCTGATAGCAA 1106
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1105 GGATCTATTGAGCTGGAAGATGGCTTTGGAATTTCGACAGCTTCCAGAAGCTGATAGCAA 1164
Query 1107 GAAGTTGTACCAACTTTCTGGTTTTCTTGACATTGATAAAATAAACCCAGAAGCATGGCC 1166
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 GAAATTATACCAACTTTCTGGTTTTCTTGACATTGATAAAATAAACCCAGAAGCATGGCC 1224
Query 1167 TGCCCTTATAGCTGACTTATCTGCTGGAGAACACGGAATAACAGCACTTGCTTTTGGGCG 1226
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1225 TGCCCTTATAGCTGACCTATCTGCTGGAGAACACGGAATAACAGCACTTTCTTTTGGGCG 1284
Query 1227 TACCAGATTGTTTCAGCC-TGCTAAAGCAGTTACAAAAGCCCAAACAGCTGTGTCTCTTG 1285
||||||||||||||| || | | |||||||||||||||||||||||||||||||||||||
Sbjct 1285 TACCAGATTGTTTCAACCGT-CGAAAGCAGTTACAAAAGCCCAAACAGCTGTGTCTCTTG 1343
Query 1286 CAATTGGTGATGCTTTTGAAGTAATTGGTGAGGAGCTAGCTCGTATCGAAGCAGAGGCTA 1345
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1344 CAATTGGTGATGCTTTTGAAGTAGTTGGTGAGGAGCTAGCTCGTATAGAAGCAGAGGCTA 1403
Query 1346 TGGCTGAAAATGTGGTTTCTGCACATAACGCGCTGGTTACTCAGGTTGAGAAGGATATTA 1405
|||| ||||||||||||| ||||||||||| ||||| ||||||| |||||||||||||
Sbjct 1404 TGGCCGAAAATGTGGTTTGTGCACATAACGAATTGGTTGCTCAGGTCGAGAAGGATATTA 1463
Query 1406 ATGCTAGCTTTGAGAAAGAGCTTTTAAGAGAAAAAGAAATAGTAGATGCAGTGGAGAAAT 1465
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 ATGCTAGCTTCGAGAAAGAGCTTTTAAGAGAAAAAGAAATAGTAGATGCAGTGGAGAAAT 1523
Query 1466 TGGCTGAAGAAGCAAAGTCGGAGCTAGCGAGACTTAGAGTTGAAAAAGAAGAGGAGACTC 1525
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1524 TGGCTGAAGAAGCAAAGTCAGAGCTAGCGAGACTTAGAGTTGAGAAAGAAGAGGAGACTC 1583
Query 1526 TTGCATTGGAGAGAGAACGCACATCGATTGAAACAGAAATGGAGGCTCTTGCAAGGATAC 1585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1584 TTGCATTGGAGAGAGAACGCACATCGATTGAAACAGAAATGGAGGCTCTTGCAAGGATAC 1643
Query 1586 GAAATGAGCTTGAGGAACAACTTCAAAGCCTTGCAAGTAACAAGGCAGAGATGTCGTATG 1645
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1644 GAAATGAGCTTGAGGAACAACTTCAAAGCCTTGCGAGTAACAAGGCAGAGATGTCATATG 1703
Query 1646 AGAAAGAGAGGTTTGATAGACTTCAAAAGCAAGTGGAGGATGAGAACCAAAAGATACTCC 1705
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1704 AGAAAGAGAGGTTTGATAGACTTCAAAAGCAAGTGGAGGATGAGAACCAAGAGATACTCC 1763
Query 1706 GGTTGCAAAATGAGCTGGAAGTGGAAAGGAACGCTTTATCCATAGCCAGGGATTGGGCTA 1765
|||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1764 GGTTACAAAATGAGCTTGAAGTTGAAAGGAACGCTTTATCCATTGCCAGGGATTGGGCTA 1823
Query 1766 AGGATGAAGCGAGAAGGGCAAGAGAACAAGCAAAAGTGCTAGAAGAAGCTAGAGGACGTT 1825
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1824 AGGATGAAGCGAGAAGAGCAAGAGAACAAGCAAAAGTGCTAGAAGAAGCTAGAGGACGTT 1883
Query 1826 GGGAGAAGTATGGCCTAAAAGTGATTGTTGACAGTGATCTCCATGAACAGACAACAA--- 1882
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1884 GGGAGAAGTATGGCCTAAAAGTGATTGTTGACAGCGACCTCCATGAACAGACAACAAAAA 1943
Query 1883 CCGAATCTACTTGGCTGAACGCAAGAAAACAAAATCCTGTAGAAGGAACCATGAAAAGAG 1942
||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||
Sbjct 1944 CCGAATCTACTTGGCTGAACGCAGGAAAGCAAAATCATGTAGAAGGAACCATGAAAAGAG 2003
Query 1943 CTGGAAATCTGATTGCGAAGCTCAAGAAGATGACGAAAGATGTAGGAGAGAAATGCAGAG 2002
|||||||||||||||| ||||| ||||||||| ||||||||||||||||||||| |||||
Sbjct 2004 CTGGAAATCTGATTGCTAAGCTGAAGAAGATGGCGAAAGATGTAGGAGAGAAATCCAGAG 2063
Query 2003 AAGTAATCAACTTAATCATAGAGAAGATAAGCCTTCTGATATCAGCCTTGAAACAACAAG 2062
||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2064 AAGTAATTTACTTGATCATAGAGAAGATAAGCCTTCTGATATCAGCCTTAAAACAACAAG 2123
Query 2063 TTCATGGCATGGAGAACAAAGCCAAAGACCTGAAAATGAAAACCAAGTCTAAAGTAGAGG 2122
||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |||||
Sbjct 2124 TTCATGGCATGGAGAACAAAGCCAAAGACCTCAAAATCAAAACTAAGTCTAAAGCAGAGG 2183
Query 2123 AAGTGTGCAGACAAACGAGCTTGAGGGTTGATGAGATCAGAAATATCTCTATAGTGAAGG 2182
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2184 AAGTGTGGAGACAAACGAGCTTGAGGGCTGATGAGATCAGAAATATCTCTATAGTGAAGG 2243
Query 2183 CTAAGGAGACTGTAGAAGAGTTTAAGGACAGAGTCGGGAAACTCGGCGAGAAATTCAAGT 2242
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2244 CTAAGGAGACTGTGGAAGAGTTTAAGGACAGAGTCGGTAAACTCGGCGAGAAATTCAAGT 2303
Query 2243 CGAAGTAG 2250
||||||||
Sbjct 2304 CGAAGTAG 2311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111646012080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5