BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357492
Length=594
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52500.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 586 8e-167
AT3G57400.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 481 4e-135
AT3G29788.1 | Symbols: | unknown pseudogene | chr3:11602028-11... 446 1e-124
> AT5G52500.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G57400.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:21301525-21302829 FORWARD LENGTH=1305
Length=1305
Score = 586 bits (317), Expect = 8e-167
Identities = 434/489 (89%), Gaps = 14/489 (3%)
Strand=Plus/Plus
Query 105 TATTTGGGGGAAGAAGAAG-AGTCATGGAGCTAATTATAACTCGTCCGAGTTGACTCATG 163
|||||||||||||||| || ||||| ||||||||||||||||| |||| |||||||||
Sbjct 614 TATTTGGGGGAAGAAG-AGTCGTCATCGAGCTAATTATAACTCGAACGAGCTGACTCATG 672
Query 164 TCTCGATAGTGGGTTTCGACGTGACTGAGTTGGATACTGAAAACTCGCTATCCGGGTTTA 223
||||||||| ||||||||||| |||||||||||| |||||||||| ||||||||||||
Sbjct 673 GCTCGATAGTTGGTTTCGACGTAACTGAGTTGGATCCTGAAAACTCTTTATCCGGGTTTA 732
Query 224 TGGATCAAGTTCCGATAAGCTTGAGGAGATGGGCTTGTTACCCAATGCTGCTTGGTAGAG 283
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 733 TGGATCAAGTTCCGTTAAGCTTGAGGAGATGGGCTTGTTACCCAATGCTTCTTGGTCGAG 792
Query 284 TAAGTCGCAGTTTCAAACACGTTATGCTTGTCGACGCTAAAACCTCATTGTTCATCGGTG 343
|| | |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 793 TACGACGCAGTTTCAAACACGTTATGCTTGTTGACGCTAAAACTTCATTTTTCATCGGTG 852
Query 344 ACCCGTTAACCCGGATTCGTAACCGGAGCCCCGACGT-AGTCCTCTTCTTCTACTCAAAA 402
||||||| ||||||||||||||||||||||||||| | |||||||||||||| |||||||
Sbjct 853 ACCCGTTTACCCGGATTCGTAACCGGAGCCCCGAC-TCAGTCCTCTTCTTCTTCTCAAAA 911
Query 403 TACAAGAAAGCCTCCGAGGTTAATCCGGCGATTTTGATCGGTGGAGCTAAAGGAATCAGG 462
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 912 CACAAGAACGCCTCCGAGGTTAATCCGGAGATTTTGATCGGTGGAGCTAAAGGAATCAGG 971
Query 463 AGATTATCGAGCTCCATGCATACTCAGATTGTGAGAGCAAGAGCAAGTGCAACGATGATG 522
||||| |||||||||||||||||| ||||||||||||| || | | || | || || |
Sbjct 972 AGATTGTCGAGCTCCATGCATACTGAGATTGTGAGAGC--GA-CGA-TG-AT-GAAGAAG 1025
Query 523 ATCAAGAAGAAGAACTCAGTTACGGAATCGGTTGTGTTGAGTCAACTCGTTGGGAATTTT 582
| | | | | | ||| ||||||||||||||||||||||||||||| |||||| ||
Sbjct 1026 AACTCGGTTACGGA---AGTAACGGAATCGGTTGTGTTGAGTCAACTCGTCGGGAATGTT 1082
Query 583 CCATATGAC 591
| |||||||
Sbjct 1083 C-ATATGAC 1090
> AT3G57400.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G52500.1);
Has 38 Blast hits to 38 proteins in 7 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
chr3:21238433-21240228 FORWARD LENGTH=1796
Length=1796
Score = 481 bits (260), Expect = 4e-135
Identities = 394/454 (87%), Gaps = 28/454 (6%)
Strand=Plus/Plus
Query 153 GTTGACTCATGTCTCGA-TAGTGGGTTTCGACGTGACTGAGTTGGATACTGAAAACTCGC 211
|||||| |||| ||| | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 876 GTTGACACATGGCTC-AGTAGTGGGTTTCGACGTGACTGAGTTGGATCCTGAAAACTCGC 934
Query 212 TATCCGGGTTTATGGATCAAGTTCCGATAAGCTTGAGGAGATGGGCTTGTTACCCAATGC 271
||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||
Sbjct 935 TATCCGGGTTTATGGATCACGTTCCGATAAGTTTGAGAAGATGGGCGTGTTACCCAATGC 994
Query 272 TGCTTGGTAGAGTAAGTCGCAGTTTCAAACACGTTATGCTTGTCGACGCTAAAACCTCAT 331
|||| ||| ||||||| |||| |||||||||||||||||| || |||||||||||||| |
Sbjct 995 TGCTAGGTCGAGTAAGACGCAATTTCAAACACGTTATGCTCGTGGACGCTAAAACCTCCT 1054
Query 332 TGTTCATCGGTGACCCGTTAACCCGGATTCGTAACCGGAGCCCCGACGT-AGTCCTCTTC 390
||||| ||||||||||| |||||||||||||||||||||||| || || ||||||||||
Sbjct 1055 TGTTCCTCGGTGACCCGCTAACCCGGATTCGTAACCGGAGCCTTGA-GTCAGTCCTCTTC 1113
Query 391 TTCTACT---CA-A--A--A-TA-CAAGAAA-GCCTCCGAGGTTAATCCGGCGATTTTGA 439
|||| || || | | | || ||||||| || ||||||||||||||||||||| |||
Sbjct 1114 TTCT-CTAAACACAGTAGTAGTAGCAAGAAAAGC-TCCGAGGTTAATCCGGCGATTCTGA 1171
Query 440 TCGGTGGAGCTAAAGGAATCAGGAGATTATCGAGCTCCATGCATACTCAGATTGTGAGAG 499
||||||||||||||||||||||||| ||||||||||| ||||| ||| |||| |||||||
Sbjct 1172 TCGGTGGAGCTAAAGGAATCAGGAGGTTATCGAGCTCGATGCACACTGAGATCGTGAGAG 1231
Query 500 CAAGAGCAAGTGCAACGATG-ATG-ATCAAGAAGAAGAACTCAGTTACGGAATCGGTTGT 557
| || | | | || | | | | | || |||||||||||||| |||||||||||||| ||
Sbjct 1232 C--GA-CGATT-CAGC-A-GCA-GCAT-AAGAAGAAGAACTCGGTTACGGAATCGGTGGT 1283
Query 558 GTTGAGTCAACTCGTTGGGAATTTTCCATATGAC 591
|||||| ||||||||||||||| ||| | |||||
Sbjct 1284 GTTGAGCCAACTCGTTGGGAATGTTC-ACATGAC 1316
> AT3G29788.1 | Symbols: | unknown pseudogene | chr3:11602028-11603824
REVERSE LENGTH=758
Length=758
Score = 446 bits (241), Expect = 1e-124
Identities = 379/442 (86%), Gaps = 24/442 (5%)
Strand=Plus/Plus
Query 160 CATGTCTCGA-TAGTGGGTTTCGACGTGACTGAGTTGGATACTGAAAACTCGCTATCCGG 218
|||| ||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 177 CATGGCTC-AGTAGTGGGTTTCGACGTGACTGAGTTGGATCCTGAAAACTCGCTACCCGG 235
Query 219 GTTTATGGATCAAGTTCCGATAAGCTTGAGGAGATGGGCT-TGTTACCCAATGCTGCTTG 277
|||| ||||| | ||||||||||||||||| ||||||| | ||||||||||||||||| |
Sbjct 236 GTTTGTGGATGACGTTCCGATAAGCTTGAGAAGATGGG-TGTGTTACCCAATGCTGCTAG 294
Query 278 GTAGAGTAAGTCGCAGTTTCAAACACGTTATGCTTGTCGACGCTAAAACCTCATTGTTCA 337
|| ||||||| |||| |||||||||| ||||||| || ||| |||||||||| ||||||
Sbjct 295 GTCGAGTAAGACGCAATTTCAAACACATTATGCTCGTGGACCCTAAAACCTCCTTGTTCC 354
Query 338 TCGGTGACCCGTTAACCCGGATTCGTAACCGGAGCCCCGACGT-AGTCCTCTTCTTCTAC 396
|| ||||||||||||||||||||||||| |||| |||||| | |||||||||||||| |
Sbjct 355 TCAGTGACCCGTTAACCCGGATTCGTAATCGGATCCCCGA-ATCAGTCCTCTTCTTCT-C 412
Query 397 TCAA-A-A-T-ACAAG-AAAGCCTCCGAGGTTAATCCGGCGATTTTGATCGGTGGAGCTA 451
| || | | | |||| |||| ||| || |||| ||||| ||||||||||| ||||||||
Sbjct 413 TAAACACAGTGGCAAGAAAAG-CTCTGATGTTATTCCGGTGATTTTGATCGATGGAGCTA 471
Query 452 AAGGAATCAGGAGATTATCGAGCTCCATGCATACTCAGATTGTGAGAGCAAGAGCAAGTG 511
||||||||||||||||||||||||| ||||| ||| ||||||||||||| || | | |
Sbjct 472 AAGGAATCAGGAGATTATCGAGCTCGATGCACACTGAGATTGTGAGAGC--GA-CGATTT 528
Query 512 CAACGATG-ATG-ATCAAGAAGAAGAACTCAGTTACGGAATCGGTTGTGTTGAGTCAACT 569
| | || | | || |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 529 -AGC--TGCA-GCAT-AAGAAGAAAAACTCGGTTACGGAATCGGTTGTGTTGAGTCAACT 583
Query 570 CGTTGGGAATTTTCCATATGAC 591
|||||||||| ||| | |||||
Sbjct 584 CGTTGGGAATGTTC-ACATGAC 604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28583229643
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5