BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357513
Length=384
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52770.1 | Symbols: | Copper transport protein family | chr... 383 7e-106
AT5G52750.1 | Symbols: | Heavy metal transport/detoxification ... 368 2e-101
AT5G52760.1 | Symbols: | Copper transport protein family | chr... 257 4e-68
> AT5G52770.1 | Symbols: | Copper transport protein family | chr5:21389766-21390189
FORWARD LENGTH=336
Length=336
Score = 383 bits (207), Expect = 7e-106
Identities = 295/335 (88%), Gaps = 15/335 (4%)
Strand=Plus/Plus
Query 11 AGAAAGCTGTGTTGCAATTAAGTATTCACGAGGAGAAAATCAGGACGAAAGTGTTTGTGA 70
||||||||||||||||||| |||| | ||||||||||||||| | |||||| |||||||
Sbjct 6 AGAAAGCTGTGTTGCAATTGGGTATCCCCGAGGAGAAAATCAGAATGAAAGT-TTTGTGA 64
Query 71 CCGTTGCTGGATTTACAGGTGTTACTTCGATAACTATGGATGACAAAACCGGGAAACTGA 130
||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 65 CCGTTGCAGGATTTACAGGTGTTACTTCGATAACAATAGATGACAAAACCGGGAAACTGA 124
Query 131 CGGTAGTGGGAGAAATTGATGTGCCAATTATCGTGATGAAGCTAAGGAAGCTATGTAACA 190
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 125 CGGTAGTGGGAGACATTGATGTACCAATTATCGTGATGAAGCTAAGGAAGCTATGTAAGA 184
Query 191 CAGAGATTGTTTCTGTTGAAG-TAGTTAAACCACCTGAGAAAAAGCCTGAACCGGAGAAA 249
|||||||| |||| || || | | ||||||||||||||||||||||||||||||||||||
Sbjct 185 CAGAGATTATTTCGGTAGATGCT-GTTAAACCACCTGAGAAAAAGCCTGAACCGGAGAAA 243
Query 250 CCGGCTCCACCTAAACC-AGCTCCACCTAAACCGACTGAAAATATTGCGGCTCCGATGAA 308
||||||||||||||||| || | | ||| || || | | | ||| |||||||||
Sbjct 244 CCGGCTCCACCTAAACCGAG-TG-A---AAA--GATTGCA--TCTC-CGGTTCCGATGAA 293
Query 309 -TTACCAGAACCAATACAATCCTGCCTATGCCTAT 342
||| |||||| | |||||||||||||||||||||
Sbjct 294 CTTAGCAGAACGAGTACAATCCTGCCTATGCCTAT 328
> AT5G52750.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr5:21384043-21384924 FORWARD LENGTH=640
Length=640
Score = 368 bits (199), Expect = 2e-101
Identities = 313/365 (86%), Gaps = 20/365 (5%)
Strand=Plus/Plus
Query 12 GAAAGCTGTGTTGCAATTAAGTATTCACGAGGAGAA-AATCAGGACGAAAGTGTTTGTGA 70
|||||||||||||||||| || ||||||||||| || |||||||| ||||| |||||| |
Sbjct 103 GAAAGCTGTGTTGCAATTGAGCATTCACGAGGA-AAGAATCAGGAAGAAAGCGTTTGTCA 161
Query 71 CCGTTGCTGGATTTACAGGTGTTACTTCGATAACTATGGATGACAAAACCGGGAAACTGA 130
||||| || ||| | ||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 162 CCGTTTCTCGATGTCCAGGTGTTACTTCGATAACAATGGATGACAAAACCGGGAAAATGA 221
Query 131 CGGTAGTGGGAGAAATTGATGTGCCAATTATCGTGATGAAGCTAAGGAAGCTATGTAACA 190
| ||||| || ||| ||||||| || |||||||||||||||||||||||||||||||||
Sbjct 222 CAGTAGTTGGTGAAGTTGATGTACCGGTTATCGTGATGAAGCTAAGGAAGCTATGTAACA 281
Query 191 CAGAGATTGTTTCTGTTGAAGTAGTTAAACCACCTGAGAAAAAGCCTGAACCGGAGAAAC 250
||||| ||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 282 CAGAGCTTGTTTCGGTTGAAGTTGTTAAACCACCTGAGAAAAAGCCTGAACCAGAGAAAC 341
Query 251 CGGCTCCACCTAAACCAGCTCCA-C-C----TAAACCGACTGAAAATATTGC--GGC--- 299
||||||||||||||||||||||| | | ||||||| |||||| | |||| |||
Sbjct 342 CGGCTCCACCTAAACCAGCTCCAGCTCCAGCTAAACCGGCTGAAATTGTTGCCTGGCCGG 401
Query 300 TCC-GATGAATTACCAGAACCAATACAATCCTGCCTATGCCTATCCTGATTCTTACTATC 358
| | |||||| ||| |||||||||||||||||||||| | ||||||||||||
Sbjct 402 TTCAGATGAACAACCCTTACCAATACAATCCTGCCTATGCA-A-----ATTCTTACTATC 455
Query 359 AACCA 363
|||||
Sbjct 456 AACCA 460
> AT5G52760.1 | Symbols: | Copper transport protein family | chr5:21386824-21387703
FORWARD LENGTH=639
Length=639
Score = 257 bits (139), Expect = 4e-68
Identities = 218/256 (85%), Gaps = 5/256 (2%)
Strand=Plus/Plus
Query 1 ATGACCGCGAAGAAAGCTGTGTTGCAATTAAGTATTCACGAGGAGAAAATCAGGACGAAA 60
|||||||| ||||| |||||||||||||| |||||||||||||||| || ||||| ||||
Sbjct 96 ATGACCGCAAAGAACGCTGTGTTGCAATTGAGTATTCACGAGGAGAGAACCAGGAAGAAA 155
Query 61 GTGTTTGTGACCGTTGCTGGATTTACAGGTGTTACTTCGATAACTATGGATGACAAAACC 120
| | |||| |||||| || ||||| |||| |||||||||||||| || | |||||||
Sbjct 156 GCGCTTGTCACCGTTTCTCGATTTTCAGGAGTTACTTCGATAACAAT-G--GACAAAAGT 212
Query 121 GGGAAACTGACGGTAGTGGGAGAAATTGATGTGCCAATTATCGTGATGAAGCTAAGGAAG 180
|||||| |||| |||| |||||| ||||||| ||| | ||||||||||||||||||||
Sbjct 213 GGGAAAATGACAATAGTTGGAGAAGTTGATGTACCAGCTGTCGTGATGAAGCTAAGGAAG 272
Query 181 CTATGTAACACAGAGATTGTTTCTGTTGAAG-TAGTTAAACCACCTGAGAAAAAGCCTGA 239
||||||||||||||||| ||||| || || | | ||||||||||||| |||||||||||
Sbjct 273 CTATGTAACACAGAGATCGTTTCAGTCGATGAT-GTTAAACCACCTGTTAAAAAGCCTGA 331
Query 240 ACCGGAGAAACCGGCT 255
||| |||||||| |||
Sbjct 332 ACCTGAGAAACCAGCT 347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18096389640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5