BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357521
Length=1839
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52860.1 | Symbols: | ABC-2 type transporter family protein... 2656 0.0
> AT5G52860.1 | Symbols: | ABC-2 type transporter family protein
| chr5:21419776-21421567 REVERSE LENGTH=1792
Length=1792
Score = 2656 bits (1438), Expect = 0.0
Identities = 1660/1770 (94%), Gaps = 4/1770 (0%)
Strand=Plus/Plus
Query 1 ATGGAAAAT-CCTCCGTCGCCTCCACCGGAGACGGCGGCCTATACATTAACCACCTCTTC 59
|||| |||| ||||| || ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 23 ATGG-AAATACCTCCATCACCTCCGCCGGAGACGGCGGCCTACACATTAACCACCTCTTC 81
Query 60 TATCTCCTATACCAAACCCAAAACCTCTCTTTCCCTCCTCGGCTTCCCCGCGACTGAGCC 119
|||||||| |||| ||| ||||||||||| ||||||||| ||||||| |||||||||||
Sbjct 82 AATCTCCTACACCATACCAAAAACCTCTCTCTCCCTCCTCCGCTTCCCGGCGACTGAGCC 141
Query 120 ACCCTCCTTTATCCTCCGCAACATCACTCTCACTGCTCATCCCACCGAGATCCTAGCCGT 179
||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 142 ACCCTCCTTTATCCTCCGCAACATCACTCTCACCGCTCATCCAACCGAGATCCTCGCCGT 201
Query 180 CGTTGGCCCTTCCGGCGCCGGAAAATCAACCCTCCTGGACATTCTCGCCTCAAAAACCTC 239
|||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 202 CGTTGGCCCTTCCGGCGCCGGAAAATCAACTCTCCTTGACATTCTCGCCTCTAAAACCTC 261
Query 240 CCCAACCTCCGGCTCAATCCTACTGAACTCCATTCCCATCAACCCTTCCTCTTATCGAAA 299
|||||| ||||| |||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 262 CCCAACTTCCGGTTCAATCCTCCTTAACTCCATTCCCATTAACCCTTCCTCTTATCGAAA 321
Query 300 GATCTCCTCTTACGTTCCCCAACACGACTCTTTCTTCCCTCTCCTCACCGTCTCTGAAAC 359
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 322 AATCTCCTCTTACGTTCCCCAACATGACTCTTTCTTCCCTCTCCTCACCGTCTCCGAGAC 381
Query 360 ATTCTCCTTCGCTGCTCGTCTCTTGCTCCCAAACCCATCAAAT-GTCTCTGAAACGGTAA 418
||||||||||||||| |||||||||||||||||||||| ||| || |||||||| ||||
Sbjct 382 CTTCTCCTTCGCTGCTTGTCTCTTGCTCCCAAACCCATC-AATAGTTTCTGAAACCGTAA 440
Query 419 CCTCTCTTCTCTCAGAGCTTAACCTAACACATCTTTCCGACACAAGACTCGCTCAGGGCT 478
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 441 CCTCTCTTCTATCAGAGCTTAACCTAACACATCTTTCCCACACAAGACTCGCTCAAGGCT 500
Query 479 TATCCGGTGGTGAAAGAAGAAGAGTCTCTATAGGTTTAAGCCTCCTTCACGACCCTTGCT 538
|||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 501 TATCCGGTGGCGAAAGAAGAAGAGTCTCGATAGGGTTAAGCCTCCTTCACGACCCTTGCT 560
Query 539 TTCTCCTCCTCGACGAACCTACTTCGGGTTTAGACAGTAAATCCGCTTTTGACGTCATCC 598
|||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 561 TTCTTCTCCTCGATGAACCCACTTCGGGTTTAGACAGTAAATCCGCTTTTGACGTCATTC 620
Query 599 ACATCCTCAAATCCATCGCTGTGTCAAGACAACGGACCGTGATATTGTCCATTCACCAGC 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 ACATCCTCAAATCCATCGCTGTGTCAAGACAACGGACCGTGATATTGTCCATTCACCAGC 680
Query 659 CTAGCTTCAAGATTCTCTCTATCATTGATCGATTGTTACTTCTTTCAAAAGGAACTGTTG 718
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 681 CTAGCTTCAAGATTCTGTCTATCATCGATCGGTTGTTACTTCTTTCAAAAGGAACTGTTG 740
Query 719 CGTACCACGGAAGGCTTGATTCCCTCGAAGGTTTCTTGCTCTTCAAGGGATTCACCGTCC 778
|||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 741 TGTACCACGGAAGACTTGACTCCCTCGAAGGTTTCTTGCTCTTCAAGGGATTTACCGTCC 800
Query 779 CTCCACAGCTCAATTCCCTCGAATACGCCATGGAAATACTTCAAGAACTTCGAGAATCCG 838
|||| |||||||||||||| ||||| || |||||||||||||||||||| ||||||||||
Sbjct 801 CTCCGCAGCTCAATTCCCTTGAATATGCAATGGAAATACTTCAAGAACTACGAGAATCCG 860
Query 839 AGGGAAACACCAACGCTATTGCTCTCCCCTCGACCGAAAACCGGAAACAGAGAGAAAAAC 898
| ||||||||| | |||| ||||||||| || | ||||||||||||||||||||||||||
Sbjct 861 ACGGAAACACCGATGCTACTGCTCTCCCTTCAATCGAAAACCGGAAACAGAGAGAAAAAC 920
Query 899 AGAGTATTGTTCGATATAGAACATCAAGAATCACCGAGATAAGCCTTCTCTCGAGAAGAT 958
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 921 AGAGTATTGTTCGATATAGAAAATCAAGAATCACCGAGATAAGCCTTCTCGCGAGAAGAT 980
Query 959 TCTGGAAGATCATTTACCGGACAAGACAACTACTTCTGACCAATGCATTAGAAGCACTTG 1018
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 981 TCTGGAAGATCATTTACCGGACAAGGCAACTACTTCTAACCAATGCATTAGAAGCCCTTG 1040
Query 1019 TAGTTGGTCTTGTCCTAGGAACTATCTACATCAACATCGGAATCGGCAAAGAAGGAATCG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1041 TAGTTGGTCTTGTCCTAGGAACTATCTACATCAACATCGGAATCGGCAAAGCAGGAATTG 1100
Query 1079 AGAAAAGATTCGGCATGTTCGCCTTCACGCTAACTTTTCTCCTCTCTTCAACAACAGAAA 1138
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1101 AGAAAAGATTCGGTATGTTCGCCTTCACGCTCACTTTTCTCCTCTCTTCAACAACCGAAA 1160
Query 1139 CCCTCCCGATCTTCATCAACGAGCGTCCGATTATTCTCAGAGAGACTTCAAGTGGTGTTT 1198
|||||||||||||||||||||||||||| ||| ||||||| |||||||| |||||| |||
Sbjct 1161 CCCTCCCGATCTTCATCAACGAGCGTCCAATTCTTCTCAGGGAGACTTCGAGTGGTATTT 1220
Query 1199 ACAGACTCTCCTCTCACATTCTCGCCAACACACTCGTTTTCTTGCCATACTTGTTCGCTA 1258
||||||||||||||||||||||||| || |||||||| |||||||| |||||||||| ||
Sbjct 1221 ACAGACTCTCCTCTCACATTCTCGCAAATACACTCGTATTCTTGCCGTACTTGTTCGTTA 1280
Query 1259 TCTCAATCATTTACTCTGTTTCGGTCTATTTTCTCATTGGTCTTTGTCCCACGTGGCAAG 1318
||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||||||
Sbjct 1281 TCTCAATCATTTACTCTGTTTCGGTCTATTTCCTCATTGGTCTCTGCCCCACATGGCAAG 1340
Query 1319 CTTTTGGGTACTTCGTTCTCGTGATATGGATTATTCTCCTAATGGCGAACTCTTTCGTTC 1378
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1341 CTTTTGGGTACTTCGTTCTCGTGATATGGATCATTCTCCTAATGGCGAACTCTTTTGTTC 1400
Query 1379 TCTTCTTGAGCTCTCTTGCCCCAAATTACATCGCGGGAACCTCTCTTGTGACGATTCTTC 1438
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1401 TCTTCTTGAGCTCTCTTGCCCCAAATTACATTACGGGAACCTCTCTTGTGACAATTCTTC 1460
Query 1439 TAGCGGCTTTCTTCTTGTTCTCCGGTTACTTCATTTCCAAGGAAAGTCTTCCCAAGTACT 1498
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 TAGCGGCTTTCTTCTTGTTTTCCGGTTACTTCATTTCCAAGGAAAGTCTTCCCAAGTACT 1520
Query 1499 GGCTTTTCATGTACTTCTTCTCAATGTATAAATATGCATTGGATGCACTTCTGATAAATG 1558
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1521 GGCTTTTCATGTACTTCTTCTCAATGTATAAGTATGCATTGGATGCACTTCTGATAAACG 1580
Query 1559 AGTACTCGTGCTTGGCCTCCAAGTGTTTGGTCTGGTTGGAGGAAGCTCAAGCGAAGATCT 1618
||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1581 AGTACTCGTGCTTAGCCTCCAAGTGTTTGGTCTGGTTGGAGGAAGCTCAAACAAAGATCT 1640
Query 1619 GCGTGGTTACGGGAGGTGACGTGTTGAAAAAGAAAGGGCTTGATGAGAAACAAAGGTGGT 1678
|| ||||||| ||||||||||||||||| |||||||| ||| |||||||||| |||||||
Sbjct 1641 GCATGGTTACTGGAGGTGACGTGTTGAAGAAGAAAGGACTTCATGAGAAACAGAGGTGGT 1700
Query 1679 TGAATGTTTATGTTTTGTTAGGGTTTTTCGTACTTTATCGCGTCTTGTGTTTTCTTGCTC 1738
| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1701 TTAATGTTTATGTTTTGTTAGGGTTTTTCGTACTTTATCGTGTGTTGTGTTTTCTTGCTC 1760
Query 1739 TCCTTAGAAGGGTTTCAGGTTCCAAGAGGT 1768
|||||||||| ||||| ||||| |||||||
Sbjct 1761 TCCTTAGAAGAGTTTCTGGTTCAAAGAGGT 1790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91013588085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5