BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357563
Length=321
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53200.1 | Symbols: TRY | Homeodomain-like superfamily prote... 544 3e-154
AT2G30420.1 | Symbols: ETC2 | Homeodomain-like superfamily prot... 204 5e-52
AT2G30424.1 | Symbols: TCL2 | Homeodomain-like superfamily prot... 174 4e-43
> AT5G53200.1 | Symbols: TRY | Homeodomain-like superfamily protein
| chr5:21582774-21584145 FORWARD LENGTH=645
Length=645
Score = 544 bits (294), Expect = 3e-154
Identities = 312/321 (97%), Gaps = 0/321 (0%)
Strand=Plus/Plus
Query 1 ATGGATAACACTGACCGTCGTCGCCGTCGTAAGCAACACAAAATCGCCCTCCATGACTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 ATGGATAACACTGACCGTCGTCGCCGTCGTAAGCAACACAAAATCGCCCTCCATGACTCT 199
Query 61 GAAGAAGTTAGCAGTATCGAATGGGAGTTTATCAACATGTCTGAACAAGAAGAAGATCTC 120
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 200 GAAGAAGTGAGCAGTATCGAATGGGAGTTTATCAACATGACTGAACAAGAAGAAGATCTC 259
Query 121 ATCTTCCGAATGTACAGACTTGTCGGTGATAGGTGGGATTTAATAGCAGGAAGAGTTCCT 180
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 260 ATCTTTCGAATGTACAGACTTGTCGGTGATAGGTGGGATTTGATAGCAGGAAGAGTTCCT 319
Query 181 GGAAGACAACCAGAGGAGATAGAGAGATATTGGATAATGAGAAACAGTGAAGGCTTTGCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 GGAAGACAACCAGAGGAGATAGAGAGATATTGGATAATGAGAAACAGTGAAGGCTTTGCT 379
Query 241 GAGAAACGACGCCAGCTTCACTCATCTTCCCACAAACATACCAAACCTCACCGTCCTCGT 300
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 380 GATAAACGACGCCAGCTTCACTCATCTTCCCACAAACATACCAAGCCTCACCGTCCTCGC 439
Query 301 TTTTCTATTTATCCTTCTTAG 321
|||||||| |||||||| |||
Sbjct 440 TTTTCTATCTATCCTTCCTAG 460
> AT2G30420.1 | Symbols: ETC2 | Homeodomain-like superfamily protein
| chr2:12960827-12962162 REVERSE LENGTH=696
Length=696
Score = 204 bits (110), Expect = 5e-52
Identities = 155/176 (88%), Gaps = 6/176 (3%)
Strand=Plus/Plus
Query 53 ATGACTCTGAAGAAGTTAGCAGTATCGAATGGGAGTTTATCAACATGTCTGAACAAGAAG 112
|||||||||||||||| || || ||||||||||||||||||| ||| | ||||||||||
Sbjct 321 ATGACTCTGAAGAAGTGAGTAGCATCGAATGGGAGTTTATCAGTATGACCGAACAAGAAG 380
Query 113 AAGATCTCATCTTC-CGAATGTACAGACTTGTCGGTGATAGGTGGGATTTAATAGCAGGA 171
||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 381 AAGATCTCATC-TCTCGAATGTACAGACTTGTCGGTAATAGGTGGGATTTAATAGCAGGA 439
Query 172 AGAGTTCCT-GGAAGACAAC-CAGAGGAGATAGAGAGATATTGGATAATGAGAAAC 225
||||| | | |||||| || || | ||||| |||||||| ||||| |||||||||
Sbjct 440 AGAGT-CGTAGGAAGA-AAGGCAAATGAGATTGAGAGATACTGGATTATGAGAAAC 493
> AT2G30424.1 | Symbols: TCL2 | Homeodomain-like superfamily protein
| chr2:12964506-12965468 REVERSE LENGTH=303
Length=303
Score = 174 bits (94), Expect = 4e-43
Identities = 133/152 (88%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 80 AATGGGAGTTTATCAACATGTCTGAACAAGAAGAAGATCTCATCTTCCGAATGTACAGAC 139
|||||||||||||||| ||| | ||||||||||||||||||||||| |||||| ||||||
Sbjct 89 AATGGGAGTTTATCAATATGACGGAACAAGAAGAAGATCTCATCTTTCGAATGCACAGAC 148
Query 140 TTGTCGGTGATAGGTGGGATTTAATAGCAGGAAGAGTTCCT-GGAAGACAACCAGAGGAG 198
|||| |||||||||||||||||||||||||||||||| | ||| || | || ||||
Sbjct 149 TTGTTGGTGATAGGTGGGATTTAATAGCAGGAAGAGTGG-TAGGACGAGAGGCAAAGGAC 207
Query 199 ATAGAGAGATATTGGATAATGAGAAACAGTGA 230
||||| ||||||||||| ||||||||| ||||
Sbjct 208 ATAGAAAGATATTGGATTATGAGAAACTGTGA 239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14929521453
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5