BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg357572

Length=1368
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G21281.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   102    8e-21


> AT1G21281.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:7448552-7448683 
FORWARD LENGTH=132
Length=132

 Score =  102 bits (55),  Expect = 8e-21
 Identities = 74/83 (89%), Gaps = 1/83 (1%)
 Strand=Plus/Plus

Query  583  ATTACCTTACCCATTAAAGGACCCCGCGCTTCCTTGGGATATGATCCTGTTGGTGAACAA  642
            ||||||||||||||||||||||||||||| || ||||||||||||| ||||||| |  ||
Sbjct  42   ATTACCTTACCCATTAAAGGACCCCGCGCATCATTGGGATATGATCTTGTTGGTCATTAA  101

Query  643  TTCAAAGTGTTGAATCTGGTGTC  665
            | ||||| |||||| ||||||||
Sbjct  102  T-CAAAGCGTTGAACCTGGTGTC  123



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 67369131390


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5