BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357577
Length=1815
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53320.1 | Symbols: | Leucine-rich repeat protein kinase fa... 2780 0.0
> AT5G53320.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr5:21636241-21638398 REVERSE LENGTH=2079
Length=2079
Score = 2780 bits (1505), Expect = 0.0
Identities = 1720/1821 (94%), Gaps = 25/1821 (1%)
Strand=Plus/Plus
Query 1 ATGAAGTGCCAAGTTGTTTTAG-TCCTCATCGGAGTAATCTTCAACATTTGCATAGAAGC 59
|||||||||||||||||||| | | ||||||| ||||||||||||| | |||||||||||
Sbjct 62 ATGAAGTGCCAAGTTGTTTT-GATACTCATCGTAGTAATCTTCAACGTCTGCATAGAAGC 120
Query 60 AGAGACGATCAAAGAAGATAAACACACACTTCTTCAATTTGTTAGCAACATCAATCACTC 119
||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||
Sbjct 121 AGAGACGATCAAAGAAGATAAACACACTCTTCTTCAATTCGTTAACAACATCAATCACTC 180
Query 120 TCATTCACTCAACTGGTCACCAAGTCTTTCCATATGTACCAAATGGACCGGTGTTACTTG 179
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 TCATTCACTCAACTGGTCACCAAGTCTTTCTATATGTACCAAATGGACCGGTGTTACTTG 240
Query 180 CAACTCCGATCATTCCAGTGTTGACGCTCTTCATTTAGCAGCCTCGGGTCTACGCGGGCA 239
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 241 CAACTCCGATCATTCCAGTGTTGACGCTCTTCATTTAGCAGCCACGGGTCTACGCGGGGA 300
Query 240 TATCGAGTTAAGCATGATCGCCAGGTTAACCAATCTTCGGTTTCTCATTCTCAGTTCTAA 299
||| ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||| ||
Sbjct 301 TATAGAGTTAAGCATCATCGCCAGGTTAAGCAATCTTCGGTTTCTCATTCTTAGTTCCAA 360
Query 300 CAACATTTCTGGACCTTTTCCTACAAGTTTACAAGCTTTGAAGAACTTAACAGAGCTTAA 359
|||||| |||||| |||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 361 CAACATCTCTGGAACTTTTCCTACAACTTTACAAGCTTTGAAGAACTTGACAGAGCTTAA 420
Query 360 ACTCGACTTCAACGAGTTTTCTGGTCATTTGCCTTTTGATTTCTCTTCTTGGGA-CAGTC 418
||||||||||||||||||||| |||| |||||||| |||||| ||||||||||| | |||
Sbjct 421 ACTCGACTTCAACGAGTTTTCGGGTCCTTTGCCTTCTGATTTATCTTCTTGGGAGC-GTC 479
Query 419 TAAC-AGTTCTTGATCTCTCTAAGAATCGGTTTGATGGTAGTATCCCGTCTTCGATTGGG 477
| || |||||||||||||||||| ||||||||| |||||||||| || ||||||||||||
Sbjct 480 T-ACAAGTTCTTGATCTCTCTAATAATCGGTTTAATGGTAGTATACCATCTTCGATTGGG 538
Query 478 AAGCTAACTC-GATTACACTCTCTGAATCTTGCTTATAACATGTTTTCGGGTGAGATTCC 536
|||||||||| | |||||||||||||||||||| ||||||| |||||| |||||||||||
Sbjct 539 AAGCTAACTCTG-TTACACTCTCTGAATCTTGCGTATAACAAGTTTTCTGGTGAGATTCC 597
Query 537 TGATCTCCATATCTCC-GGTCTGAAGCTTCTCGACTTAGCGCACAACAACCTAACAGGAA 595
|||||||||||| ||| ||| ||||||| ||| ||||||| |||||||| ||||||||||
Sbjct 598 TGATCTCCATAT-TCCAGGTTTGAAGCTGCTCAACTTAGCTCACAACAATCTAACAGGAA 656
Query 596 CTGTACCAGAGTCATTGCAGAGATTTCCACTCTCAGCATTTGTCGGAAACAAAGTTTCCT 655
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 657 CTGTACCTCAGTCATTGCAGAGATTTCCACTCTCAGCATTTGTCGGAAACAAAG-----T 711
Query 656 CCGGAAAGCTGGCTCCGGTTCATTCATCATTAAGGAAACACACGAAACATCACAACCATG 715
|||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 -------GCTGGCGCCTGTTCATTCATCATTAAGGAAACACACGAAACATCACAACCATG 764
Query 716 CAGTTCTTGGCATAGCATTAAGCGCGTGTTTTGCGATACTAGCTCTGCTTGCTATCTTAT 775
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 765 TAGTTCTTGGCATAGCATTAAGCGTGTGTTTTGCGATACTAGCTCTGCTTGCTATCTTAT 824
Query 776 TGGT-A--ATCATCCATAATAGAGAAGAGCAAAGAAGATCTACAAAGGAAAAACCTAGCA 832
|||| | ||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 825 TGGTAATCATCATCCATAATAGAGAAGAGCAAAGAAGATCTTCAAAGGACAAACCTAGCA 884
Query 833 AGAGGAGGAAGGATTCAGATCCAAACGTAGGTGAAGGAGATAACAAGATTGTGTTTTTCG 892
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 885 AGAGGAGGAAGGATTCAGATCCAAACGTGGGTGAAGGAGATAACAAGATTGTGTTCTTCG 944
Query 893 AAGGGAAGAATCTTGTCTTTGACCTAGAAGACTTGTTGAGAGCTTCAGCAGAAGTTTTAG 952
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 945 AAGGGAAGAATCTTGTCTTTGACCTAGAAGACTTGTTGAGAGCTTCTGCAGAAGTTTTAG 1004
Query 953 GGAAGGGCCCGTTTGGAACAACCTACAAGGTTGATCTCGAGGACTCTGCAACCATCGTTG 1012
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1005 GGAAGGGCCCGTTTGGGACAACCTACAAGGTTGATCTCGAGGACTCTGCGACCATCGTTG 1064
Query 1013 TGAAAAGGATCAAGGAAGTGAGTGTACCTCAGCGGGAATTCGAGCAGCAAATCGAAAATA 1072
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1065 TGAAAAGGATCAAGGAAGTGAGTGTACCTCAACGGGAATTCGAGCAGCAAATCGAAAATA 1124
Query 1073 TTGGCAGCATCAAACATGAGAATGTTTCCACTTTAAGAGGATATTTCTACTCTAAGGATG 1132
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1125 TTGGCAGCATCAAGCATGAGAATGTTGCCACTTTAAGAGGATATTTCTACTCTAAGGATG 1184
Query 1133 AGAAGCTCGTGGTTTATGATTACTATGAACAAGGAAGTCTTTCAACATTGCTACACGGTC 1192
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1185 AGAAGCTCGTGGTTTATGATTACTACGAACATGGAAGTCTTTCAACATTGCTACACGGTC 1244
Query 1193 AGAGAGGTCTTAGGGATCGGAAACCTCTAGAATGGGAAACTAGACTGAATATGGTGTATG 1252
||| |||||| ||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1245 AGAAAGGTCTCAGGGATCGGAAGCGTCTAGAATGGGAAACTAGACTGAATATGGTGTATG 1304
Query 1253 GAACAGCAAGAGGAGTAGCTCATATCCACTCACAAAGCGGAGGGAAACTAGTCCACGGGA 1312
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1305 GAACAGCAAGAGGAGTAGCTCATATCCACTCACAAAGCGGAGGTAAACTAGTCCACGGGA 1364
Query 1313 ACATAAAGTCCTCAAACATTTTCCTCAACGCAAAAGGATATGGCTGCATCTCTGGAGCAG 1372
||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| |||
Sbjct 1365 ACATAAAATCCTCAAACATTTTCCTCAACGGGAAAGGATATGGCTGCATATCTGGAACAG 1424
Query 1373 GAATGGCTACACTGATGCATTCACTACCCCGACATGCAGTTGGCTATCGAGCACCAGAGA 1432
||||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||
Sbjct 1425 GAATGGCTACACTGATGCATTCATTACCGCGGCATGCAGTTGGCTATCGTGCACCAGAGA 1484
Query 1433 TAACAGACACAAGAAAAGGGACTCAACCGTCGGATGTGTATAGTTTCGGGATTTTGATAT 1492
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1485 TAACAGACACAAGAAAAGGGACTCAACCGTCTGATGTGTATAGTTTCGGGATATTGATAT 1544
Query 1493 TCGAGGTACTAACAGGAAAATCAGAAGTGGCAAACCTGGTGAGGTGGGTGAACTCGGTGG 1552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 TCGAGGTACTAACAGGAAAATCAGAAGTGGCAAACCTGGTGAGGTGGGTGAACTCGGTGG 1604
Query 1553 TTAGAGAAGAATGGACAGGAGAGGTGTTTGATGTGGAGCTTTTGAGGTGTACCCAAGTAG 1612
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1605 TTAGAGAAGAATGGACAGGAGAGGTGTTTGATGAGGAGCTTTTGAGGTGTACCCAAGTAG 1664
Query 1613 AGGAAGAGATGGTGGAAATGCTGCAGGTTGGTATGGTTTGCACGGCGAGATTACCAGAGA 1672
|||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1665 AGGAAGAGATGGTGGAGATGCTTCAGGTTGGTATGGTTTGCACAGCGAGATTACCAGAGA 1724
Query 1673 AGAGACCAAACATGATTGAGGTAGTGAGAATGGTGGAAGAGATAAGACCAGAGAAACTAG 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 AGAGACCAAACATGATTGAGGTAGTGAGAATGGTGGAAGAGATAAGACCAGAGAAACTAG 1784
Query 1733 CCAGCGGATACAGATCAGAGGTTTCCACAGGTGCAACAACAACTCCAATTGGAAGTCTAT 1792
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1785 CCAGCGGATACAGATCAGAGGTTTCCACAGGTGCGACAACAACTCCGATTGGAAGTCTAT 1844
Query 1793 CAGGATCGCCGTATATACTAT 1813
||||||| |||||||||||||
Sbjct 1845 CAGGATCTCCGTATATACTAT 1865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89808775005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5