BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357610
Length=2076
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53620.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 2898 0.0
> AT5G53620.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 28929 Blast hits to 19542
proteins in 1425 species: Archae - 211; Bacteria - 3079;
Metazoa - 14558; Fungi - 2157; Plants - 966; Viruses - 80;
Other Eukaryotes - 7878 (source: NCBI BLink). | chr5:21780947-21785230
FORWARD LENGTH=2390
Length=2390
Score = 2898 bits (1569), Expect = 0.0
Identities = 1779/1876 (95%), Gaps = 31/1876 (2%)
Strand=Plus/Plus
Query 230 AGAATGGAAGAGAGCAGGATGGTTATTCAAATAGTGAGATGTTGCAGCAACAGATTCTTA 289
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 AGAATGGAAGAGAACAGGATGGTTATTCAAATAGTGAGATGTTGCAGCAACAGATTCTTA 407
Query 290 ATGTTTCTAGAAAGAAAGGAGAACTT-CAGCAGTTGGAGATTGAGCTTCGAGCTCAGATG 348
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 408 ATGTTTCTAGAAAGAAAGGAGAA-TTACAGCAGTTGGAGATTGAGCTTCGAGCTCAGATG 466
Query 349 ATTGCGAGACATGAGATCATGGAGATCCAGAGCAACTATGAATCTCAATTCACAGAGTAT 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 ATTGCGAGACATGAGATCATGGAGATCCAGAGCAACTATGAATCTCAATTCACAGAGTAT 526
Query 409 GCTAATGCTTCTGCTAGAATGCAGGAGCAACTTCATGAGAAGGAGAGATCTATTCGGGAA 468
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 527 GCTAATGCTGCTGCTAGAATGCAGGAGCAACTTCATGAGAATGAGAGATCTATTCGGGAG 586
Query 469 GCAGAGAGGAAGTTAGAAGAGAAAGACAGAGAGCTACATGCGATTAAACTGGATAATGAA 528
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 587 GCAGAGAGGAAGTTAGAAGAGAAAGACAGAGAGCTACATGCGATTAAACTAGATAATGAA 646
Query 529 GCGGCCTGGGCCAAAGAGGGTATCCTAAGAGAACAAAATAAAGAACTTGCCACATTCAGA 588
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 GCGGCTTGGGCCAAAGAGGGTATCCTAAGAGAACAAAATAAAGAACTTGCCACATTCAGA 706
Query 589 AGAGAGCATGATCACTCTGAAGCTGAGAGGTCCCAAAATATACATAAAATATCTGAACTT 648
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 707 AGAGAGCGTGATCACTCTGAAGCTGAGAGGTCCCAGAATATACATAAAATATCTGAACTT 766
Query 649 CAGGAGCATATTCAAGAGAAAGAGAGCCAGCTCAGTGAATTGCAGGAACAAAATAGGATT 708
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 767 CAGGAGCATATTCAAGAGAAAGAGAGTCAGCTCAGTGAATTGCAGGAACAAAATAGGATT 826
Query 709 GCTCAAGAAACTATCTTGTACAAGGATGAGCAACTAAGAGAAGCACAAGGTTGGATTGCC 768
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 GCTCAAGAAACTATCCTGTACAAGGATGAGCAACTAAGAGAAGCACAAGGTTGGATTGCT 886
Query 769 CGTGCCCAAGAGATGGATGCTTTACAATCATCTACAAATCATTCGTTGCAGGCTGAATTG 828
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 CGTGCCCAAGAGATTGATGCTTTACAATCATCTACAAATCATTCGTTGCAGGCTGAATTG 946
Query 829 CGAGAACGTACTGAGCAGTATAACCAGCTCTGGCATGGTTGTCAGAGACAGTTTGCAGAG 888
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 947 CGAGAACGTACTGAGCAGTATAACCAGCTCTGGCATGGTTGTCAGAGGCAGTTTGCAGAG 1006
Query 889 ATGGAGAGATTGCATTTGCATACAGTGCAACAGCTTCAGCATGAGCTTGCCAATGTAAGG 948
||||||||||||||| |||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 1007 ATGGAGAGATTGCATGTGCACACAGTGCAACAGCTTCAGCAAGAGCTTGCTAATGTAAGG 1066
Query 949 GAAGCAGGTGGTTCCAAAACAAATTCCAGCGGTGCCTCCCAGACTATTCAGAACAGCGGG 1008
||||| ||||||||||||||||| ||| | || |||||||||||||||||||||||||||
Sbjct 1067 GAAGCTGGTGGTTCCAAAACAAACTCCGGTGGAGCCTCCCAGACTATTCAGAACAGCGGG 1126
Query 1009 AACCAATTTGATGCTCATGGAAACAGCGCAGAAAGTGCAAACATTA--G----------T 1056
|||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1127 AACCAATTTGATGCTCATGGAAACAGCGCAGAAAGTGCAAACATTAGTGTCCATTCAAAT 1186
Query 1057 ---------GCAGATAACATCTCATCTTTTACTTCAACTGATGATAAGGCTACCCAGAAC 1107
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 GGAAAAAGCGCAGATAACATCTCATCTTTTACTTCAACTGATGATAAGGCTACCCAGAAC 1246
Query 1108 AACCGTGTTGATAGGATGTCATCTTCTAATCTTGGGACGCATGGGTACCTTCAAGCGGGT 1167
|||||||||||| |||| ||| |||| ||||||| ||| ||||||| ||||||||| |||
Sbjct 1247 AACCGTGTTGATGGGATATCAGCTTCCAATCTTGCGACACATGGGTTCCTTCAAGCTGGT 1306
Query 1168 CAGATGACCCCTCTGCATTCGTTTGTCATGCATCAACAAGAGATTTCTCAGCTTGTTCAG 1227
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1307 CAGATGACCCCTCTGCATTCATTTGTCATGCATCAACAAGAGATTTCTCAGCTTGTTCAG 1366
Query 1228 CCTCAGGTCCCTTCACCTCATTTTGCACAATCAGTGTTGCTGCAGCAAAAGGCT--G--T 1283
|||||||||||||||| ||| ||| ||||||||||||||| |||||||||||| | |
Sbjct 1367 CCTCAGGTCCCTTCACAACATATTGAACAATCAGTGTTGCTACAGCAAAAGGCTCAGGCT 1426
Query 1284 --ACCAGATAGTTCACAGATGCCTATGCAGAATCATGTGCATCCATCTCAAGGTGCTCAT 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1427 GTACCAGATAGTTCACAGATGCCTATGCAGAATCATGTGCATCCATCTCAAGGTGTTCAT 1486
Query 1342 GGCTTGGTACAGTCCTTTGGTCAAGGGTATGGAGATATTCAAACTAGCCAAGTAGCACAA 1401
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1487 GGCTTGGTACAATCCTTTGGTCAAGGGTACGGAGATATTCAAACTAGCCAAGTAGCACAA 1546
Query 1402 TATGGAGCTACGACACCATCGTCCTCTGTGAATGAACAGGCAGTGGAATCTGGCAATGGA 1461
|| ||| |||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 1547 TACGGAACTACGACAACACCATCCTCTGTGAATGAACAGGCAGTGGAATCTGGCAATGGA 1606
Query 1462 GATTATAATGGATCTCATCAGTCAGAGAATAACTTTCAAGACATTTCTTCACAGTTCCGT 1521
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 GATTATAATGGATCTAATCAGTCAGAGAATAACTTTCAAGACATTTCTTCACAGTTCCGT 1666
Query 1522 GATGTGCTAAGGCTTGATTCCCATACCCATAATCAGAAACCTGAGGAAGCT-AATGGTCA 1580
|||| |||||||||||||| ||| |||| |||||||||||||||||| || ||||||||
Sbjct 1667 GATGCCCTAAGGCTTGATTCTCATTCCCAGAATCAGAAACCTGAGGAA-CTCAATGGTCA 1725
Query 1581 GGTTTCACCTGACGAGCACAATGGTGCTAAATCCATTGTCTCTGAAACTCTAGTCTCATC 1640
|||||||||||| || |||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1726 GGTTTCACCTGATGAACACAGTGGTGCTAAATCCATTGTCCCTGAAACTCTAGTCTCATC 1785
Query 1641 TGGGAAACCTGAGAGGAACTCAGAGAGTGCTCTGCTCGATGAAAGGTCGCTTTTGACATG 1700
|| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1786 CGGAAAACCTGAGAGGAACTCAGAGTGCGCTCTGCTCGATGAAAGGTCGCTTTTGACATG 1845
Query 1701 CATCCTCCGTACTATACCAGCTGGTGGAAGAATCAGAATCAGTTCAACGCTTCCAAACCG 1760
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1846 CATCCTCCGTACTATACCAGCTGGTGGGAGAATCAGAATCAGTTCAACGCTTCCAAACCG 1905
Query 1761 TTTGGGCAAAATGCTAGCCCCTCTGCACTGGCATGATTACAGGAAAAAGTACGGGAAGCT 1820
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1906 TTTGGGCAAAATGCTAGCCCCTCTACACTGGCATGATTACAGGAAAAAGTACGGGAAGCT 1965
Query 1821 GGACGATTTTGTTGCTAGCCATCTTGAGTTATTTGCGATAGAGGATGACTACATTCAAGT 1880
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1966 GGATGATTTTGTTGCTAGCCATCTTGAGTTATTTTCGATAGAGGATGACTACATTCAAGT 2025
Query 1881 TAGAGACGGTGCACAGAAAATGGTagcagcttcagcagcagcagccaaagtggcagcagc 1940
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2026 TAGAGACGGTGCACAGAAAATGGTAGCAGCATCAGCAGCAGCAGCCAAAGTGGCAGCAGC 2085
Query 1941 agctgcagcGTCGTCATCCCCAAACTCCATCTATGTGGCTATGACTCCTATGGCTCAGTC 2000
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2086 AGCTGCAGCTTCGTCATCCCCAAACTCCATCTATGTGGCTATGACTCCTATGGCTCAGTC 2145
Query 2001 CCAAGGGTTAAAGAAGAATGACAACAGAGGTAGGCAGAGCTCTGATTTTATGGTGAAGCA 2060
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2146 TCAAGGGTTAAAGAAGAATGACAACAGAGTTAGGCAGAGCTCTGATTTTATGGTGAAGCA 2205
Query 2061 GCAAAGAAAGCTCTGA 2076
||||||||||||||||
Sbjct 2206 GCAAAGAAAGCTCTGA 2221
Score = 270 bits (146), Expect = 3e-71
Identities = 161/168 (96%), Gaps = 2/168 (1%)
Strand=Plus/Plus
Query 8 CCGCTTCGAGCGTAGCTGCAACTCGTGGCGGTTCCCTTCAGAATCCGTCGCCGACGGCTA 67
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CCGCTTCGAGCGTAGCTACAACTCGTGGCGGTTCCCTTCAGAATCCGTCGCCGACGGCTC 242
Query 68 CGTCAAGAAAAGAATGGCGCGCCGTTTCGGATTCACAAGACACTACAGATTATGTGGATT 127
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 243 CGTCAAGAAAAGAGTGGCGCGCCGTTTCGGATTCACAAGACACCACAGATTATGTGGATT 302
Query 128 TGGAACAGTTAAAGCTAAATC-GGACAGATGAGAGAACGATTTATGAG 174
|||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct 303 TGGAACAGTTAAAGCTGAA-CAGGACAGATGAGAGAACGATTTATGAG 349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102911117250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5