BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357611
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05450.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Cystatin-... 292 2e-78
> AT3G05450.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Cystatin-related,
plant (InterPro:IPR006525); BEST Arabidopsis thaliana
protein match is: Cystatin/monellin superfamily protein
(TAIR:AT3G05685.1); Has 2098 Blast hits to 1525 proteins in
202 species: Archae - 2; Bacteria - 561; Metazoa - 485; Fungi
- 302; Plants - 191; Viruses - 20; Other Eukaryotes - 537
(source: NCBI BLink). | chr3:1573909-1576418 REVERSE LENGTH=1323
Length=1323
Score = 292 bits (158), Expect = 2e-78
Identities = 188/202 (93%), Gaps = 3/202 (1%)
Strand=Plus/Plus
Query 409 GGATTCAATGTGAAGTTGGAGCATGTTTTGAGGGCTAATTTCAACCCAGGGGGCAGGACA 468
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1075 GGATTTAATGTGAAGTTGGATCATGTTTTGAGGGCTAATTTCAACCCAGGGGGCAGGACA 1134
Query 469 ACATACTACATCACATTTGCTGCTAGAGAGTCTGATTCTCCTGATGCACCTCTAGTGGAA 528
|| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1135 ACGTACTACATCACTTTTGCTGCAAGAGAGTCTGATTCTCCTGATGCACCTCTAGTGGAG 1194
Query 529 TATCAAGTTAAGGTGGATTGGTCTGCGGGCAATACTTATCCCATCCTTTGCAGACCCACT 588
||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1195 TATCAAGCTAAGGTGGATTGGTCTGCAGGCAAGACTTATCCCATCCTTTGCAGACCCACT 1254
Query 589 TCTCCACCAAAACTGGTTGAAG 610
|| ||| ||| |||||||||
Sbjct 1255 TC---ACCTAAATTGGTTGAAG 1273
Score = 259 bits (140), Expect = 2e-68
Identities = 271/328 (83%), Gaps = 34/328 (10%)
Strand=Plus/Plus
Query 13 TCAAGCGACGGCGAGGCCAAG-GATGGATCTTCAAGCGAAACCCAATCGACGGAGTAC-A 70
||||||||||||||| |||| | ||||||||||||||||| |||||| ||||||| | |
Sbjct 670 TCAAGCGACGGCGAGATCAAGTG-TGGATCTTCAAGCGAAAACCAATCAACGGAGT-CAA 727
Query 71 TGGAAATTTCCACGGGCGATGAATCTTCTATGCTGGGGAAGCGCAAGGTTGAAACCCCC- 129
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 728 TGGAAATTACCACGGGAGATGAATCTTCTATGCTGGGGAAGCGCAAGGTTGAAACCACCG 787
Query 130 ATCCTGGAGGATCTC-AGTGAAAACGA--AGGCG-A-C---AT-A----GA--AGGTG-- 172
| ||||||||||| | | |||||| || ||| | | | || | || ||| |
Sbjct 788 A-CCTGGAGGATCCCGA-TGAAAATGACGAGGAGGATCCCGATGAAAACGACGAGGAGGA 845
Query 173 TCG--AC-GATGATAGTGATTCCGAATGGGATAAGGATAGCTTCGATGGTCTG-GAATAT 228
| | | | ||||||||||||||||||||||||||||||||||||||| | | || |||
Sbjct 846 TAGTGAAAG-TGATAGTGATTCCGAATGGGATAAGGATAGCTTCGATGGCC-GAGAGTAT 903
Query 229 CATTCATGTGATGATCAGA-AGGAGTATATCGACAAAT-ATTTTGAGAAGAGGGCCCGTT 286
||||| | ||||||||||| || ||||| | || || | ||||||||||||||||||
Sbjct 904 CATTCCTCTGATGATCAGAGAG-AGTATGCC-ACCAAGGACCTTGAGAAGAGGGCCCGTT 961
Query 287 TTTACAAGCGCACGGTCATCGAAACCAA 314
||||||||||||||||||||||||||||
Sbjct 962 TTTACAAGCGCACGGTCATCGAAACCAA 989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32802897991
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5