BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357624
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53620.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 407 2e-112
> AT5G53620.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 28929 Blast hits to 19542
proteins in 1425 species: Archae - 211; Bacteria - 3079;
Metazoa - 14558; Fungi - 2157; Plants - 966; Viruses - 80;
Other Eukaryotes - 7878 (source: NCBI BLink). | chr5:21780947-21785230
FORWARD LENGTH=2390
Length=2390
Score = 407 bits (220), Expect = 2e-112
Identities = 315/361 (87%), Gaps = 6/361 (2%)
Strand=Plus/Plus
Query 850 CAAGGAGCACAATATGGATCTTCTATACCGGCATCCTCTGTGAATGAACAGGCAGTGAAA 909
|||| ||||||||| ||| || | | | | |||||||||||||||||||||||||| ||
Sbjct 1535 CAAGTAGCACAATACGGAACTACGACAACACCATCCTCTGTGAATGAACAGGCAGTGGAA 1594
Query 910 TCTGGCAATGGAGATTATCTTGGACCCATTCACG-CAGAGAATAACTTTCAAGACATTTC 968
|||||||||||||||||| |||| | | ||| | |||||||||||||||||||||||||
Sbjct 1595 TCTGGCAATGGAGATTATAATGGATCTAATCA-GTCAGAGAATAACTTTCAAGACATTTC 1653
Query 969 TTCACAGTTCCGTGATGCGCTAAGGATAGACTC-CAATGCCTTAAATCAGAAGCCTGAGG 1027
|||||||||||||||||| |||||| | || || || | || || |||||| |||||||
Sbjct 1654 TTCACAGTTCCGTGATGCCCTAAGGCTTGATTCTCATTCCCAGAA-TCAGAAACCTGAGG 1712
Query 1028 AGACT-AATGGTCAGGTTTCAGCTGGTGAACATAATGGTGCTGGATCCATTGTGCCTGAA 1086
| ||| ||||||||||||||| ||| |||||| | ||||||| ||||||||| ||||||
Sbjct 1713 A-ACTCAATGGTCAGGTTTCACCTGATGAACACAGTGGTGCTAAATCCATTGTCCCTGAA 1771
Query 1087 ACTCTAGTCTCATCCGGGAAAGCTGAGAGGAACTTAGAGAGTGCTCTTCTTGATGAAAGG 1146
||||||||||||||||| ||| |||||||||||| |||| | ||||| || |||||||||
Sbjct 1772 ACTCTAGTCTCATCCGGAAAACCTGAGAGGAACTCAGAGTGCGCTCTGCTCGATGAAAGG 1831
Query 1147 TCGCTTTTGACATGCATCCTCTGTACTATACCAGCTGGTGGAAGAATCAGAATCAGTTCA 1206
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1832 TCGCTTTTGACATGCATCCTCCGTACTATACCAGCTGGTGGGAGAATCAGAATCAGTTCA 1891
Query 1207 A 1207
|
Sbjct 1892 A 1892
Score = 359 bits (194), Expect = 5e-98
Identities = 325/384 (85%), Gaps = 25/384 (7%)
Strand=Plus/Plus
Query 414 TATCCAGAACAGTGGGAACCAATTTGAGGCTCATGGAAACAGTTCGGAAAGTGCAAACGT 473
||| |||||||| |||||||||||||| |||||||||||||| | |||||||||||| |
Sbjct 1111 TATTCAGAACAGCGGGAACCAATTTGATGCTCATGGAAACAGCGCAGAAAGTGCAAACAT 1170
Query 474 TAATGTCCATTCAAATGGAAAAAACGCAGATAATATATCATCTTTTACTTCAAGTGATGA 533
|| |||||||||||||||||||| ||||||||| || |||||||||||||||| ||||||
Sbjct 1171 TAGTGTCCATTCAAATGGAAAAAGCGCAGATAACATCTCATCTTTTACTTCAACTGATGA 1230
Query 534 TAGGGCTACCCAGACCAACCGTGTTGATGTG-TATCAGCTTCTC-ATCTTG-GATGCATG 590
|| ||||||||||| |||||||||||||| | |||||||||| | |||||| || ||||
Sbjct 1231 TAAGGCTACCCAGAACAACCGTGTTGATGGGATATCAGCTTC-CAATCTTGCGACACATG 1289
Query 591 GGTACTTCTCAAGC-GGTCAAATGACTCCTCTGCACTCTTTTATCATGCATCAACAAGAG 649
||| | | |||||| ||||| ||||| |||||||| || ||| |||||||||||||||||
Sbjct 1290 GGTTCCT-TCAAGCTGGTCAGATGACCCCTCTGCATTCATTTGTCATGCATCAACAAGAG 1348
Query 650 ATTCCTCAGCTTGTTCAGGCTCAGGGCCCTTCACCTCATGTTGTACAATCAGTGTTGCTG 709
||| |||||||||||||| |||||| |||||||| ||| ||| |||||||||||||||
Sbjct 1349 ATTTCTCAGCTTGTTCAGCCTCAGGTCCCTTCACAACATATTGAACAATCAGTGTTGCTA 1408
Query 710 CAGCAAAA-G-T-----T-CA-CAGAT-G--CCCAGA---C----CAGAATCATGTGCAT 750
|||||||| | | | | ||||| | | |||| | |||||||||||||||
Sbjct 1409 CAGCAAAAGGCTCAGGCTGTACCAGATAGTTCACAGATGCCTATGCAGAATCATGTGCAT 1468
Query 751 CCATCTCAAGGTGTTCATGGCTTG 774
||||||||||||||||||||||||
Sbjct 1469 CCATCTCAAGGTGTTCATGGCTTG 1492
Score = 147 bits (79), Expect = 4e-34
Identities = 118/135 (87%), Gaps = 9/135 (7%)
Strand=Plus/Plus
Query 277 CAGGCTGAATTGCGAGAACGTACTGAGCACTATAACCAGCTCTGGCATGGTTGTCAGAGA 336
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 935 CAGGCTGAATTGCGAGAACGTACTGAGCAGTATAACCAGCTCTGGCATGGTTGTCAGAGG 994
Query 337 CAGTGGTTTCAGTTTGTGGAGATGGAGAGATTGCATTTGCATACAGTGCAACAGCTTCAG 396
|||| || ||| ||||||||||||||||| |||| ||||||||||||||||||
Sbjct 995 CAGT--TTGCAG-------AGATGGAGAGATTGCATGTGCACACAGTGCAACAGCTTCAG 1045
Query 397 CTTGAGCTTGCCAAT 411
| |||||||| |||
Sbjct 1046 CAAGAGCTTGCTAAT 1060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69778757550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5