BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg357625

Length=663
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G54260.1 | Symbols: MRE11, ATMRE11 | DNA repair and meiosis ...   490    7e-138


> AT5G54260.1 | Symbols: MRE11, ATMRE11 | DNA repair and meiosis 
protein (Mre11) | chr5:22032069-22037991 FORWARD LENGTH=2574
Length=2574

 Score =  490 bits (265),  Expect = 7e-138
 Identities = 311/333 (93%), Gaps = 3/333 (1%)
 Strand=Plus/Plus

Query  1    ATGGAGAAGGATGAAATAAGGCGGCATGATTCATTTAAGGCTTTTAAAGAGATATGCTCT  60
            ||||||||||||||||| ||||||||||||||||||||||||||  |||||||||| |||
Sbjct  236  ATGGAGAAGGATGAAATTAGGCGGCATGATTCATTTAAGGCTTTCGAAGAGATATGTTCT  295

Query  61   ATAGCGGAGGAGAAACAGGTGAACTTCTTACTCCTCGGAGGTGATATTTTTCATGAGAAT  120
            ||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct  296  ATAGCTGAGGAGAAACAGGTGGACTTCTTACTCCTCGGAGGTGATCTTTTTCATGAGAAT  355

Query  121  AAACCCTCTAGAACTACGCTAGTTAAAGCCATTGAAATTCTTCGTCGCCACTGTCTTAAC  180
            |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || 
Sbjct  356  AAACCCTCTAGAACTACGTTAGTTAAAGCCATTGAAATTCTTCGTCGCCACTGTCTGAA-  414

Query  181  T-ATAAACCAGTGCATTTTCAAGTTGTCAGCGACCAGACTGTAAATTTTCAAAATGCGTT  239
            | ||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct  415  TGATAAACCAGTGCAGTTTCAAGTAGTCAGCGACCAGACAGTAAATTTTCAGAATGCGTT  474

Query  240  TGGTCATGTAAACCACGAGGATCCACACTTCAATGTAGGTTTGCCCGTGTTCAGTATTCA  299
            |||||| || ||  ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  475  TGGTCAAGTCAATTACGAGGATCCACACTTCAATGTAGGCTTGCCCGTGTTCAGTATTCA  534

Query  300  TGGAAACCATGATGATCCAGCCAGAGTGGTACA  332
            |||||||||||||||||||||| |||||| |||
Sbjct  535  TGGAAACCATGATGATCCAGCCGGAGTGG-ACA  566


 Score =  156 bits (84),  Expect = 3e-37
 Identities = 98/105 (93%), Gaps = 0/105 (0%)
 Strand=Plus/Plus

Query  551  GGGTGAAATCAAAACCCAAAAATGCAATAAGTGAGCACTTTCTTCCACGGTTCCTTGACT  610
            ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct  843  GGGTGAAATCAAACCCCAAAAATGCAATAAGTGAGCACTTTCTTCCACGTTTCCTCGACT  902

Query  611  TCATTGTGTCGGGCCATGAGCATGAATGCCTTATTGACCGCCAGG  655
            ||||||||| ||||||||||||||||||||| || |||| |||||
Sbjct  903  TCATTGTGTGGGGCCATGAGCATGAATGCCTAATCGACCCCCAGG  947


 Score =  150 bits (81),  Expect = 1e-35
 Identities = 99/107 (93%), Gaps = 4/107 (4%)
 Strand=Plus/Plus

Query  446  AGGAAACATCAGGGATGAACGTCTCAATTGAATGTCTCAGACCCCACCCACATGCTGCCC  505
            |||||||||||||||||||||||||||| |||||| |||||||||||  |  ||||| ||
Sbjct  712  AGGAAACATCAGGGATGAACGTCTCAATAGAATGTTTCAGACCCCAC--A--TGCTGTCC  767

Query  506  AATGGATGAGGCCTGAAGTTCAAGAAGGAGGTGATGTTTCTGACTGG  552
            ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  768  AATGGATGAGGCCTGAAGTTCAAGAAGGATGTGATGTTTCTGACTGG  814



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32049385786


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5