BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg357626

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G11000.1 | Symbols:  | Plant protein of unknown function (DU...   130    1e-29


> AT5G11000.1 | Symbols:  | Plant protein of unknown function (DUF868) 
| chr5:3479029-3480425 REVERSE LENGTH=1397
Length=1397

 Score =  130 bits (70),  Expect = 1e-29
 Identities = 89/98 (91%), Gaps = 1/98 (1%)
 Strand=Plus/Plus

Query  10   GATTCAGTCAAAGAAGCTTACGCTCGTGCTAAATCGGCGAAATCGCCGACGAATCCACAA  69
            |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct  538  GATTCAGTCAAAGAAGCTTACGCTCGTGCTAAATCGGCGAAACCTCCGACGAATCCGCAA  597

Query  70   GCTTTGTTTATTGAGGAAAGATCATGTGTTTGGAGCTA  107
            ||| | | | ||||||||||| || |||||||||||||
Sbjct  598  GCTCT-TCTGTTGAGGAAAGAGCACGTGTTTGGAGCTA  634



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22705834444


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5