BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357627
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53780.1 | Symbols: | Protein of unknown function (DUF295) ... 854 0.0
> AT5G53780.1 | Symbols: | Protein of unknown function (DUF295)
| chr5:21839818-21841977 REVERSE LENGTH=1131
Length=1131
Score = 854 bits (462), Expect = 0.0
Identities = 544/583 (93%), Gaps = 7/583 (1%)
Strand=Plus/Plus
Query 40 GAAGAAGAAAGTGATCACAAGGATGCTCGTTTCTTCTCTTCATCTCCAAAGAAGCAAACT 99
|||||||||||||||||||||| ||||||||||||||| |||||||| | |||||||||
Sbjct 85 GAAGAAGAAAGTGATCACAAGGCTGCTCGTTTCTTCTCCTCATCTCC--A-AAGCAAACT 141
Query 100 CCATATATGGTACTTGAAGGTGATAAAGTAGGAGAGTCTTCTGAAGCTGAAAATATCATA 159
|| ||||||||||||| |||||||||||||||||||||| | ||||||||||| |||||
Sbjct 142 CCGTATATGGTACTTGTAGGTGATAAAGTAGGAGAGTCTCCAGAAGCTGAAAACATCATC 201
Query 160 ATGAGTTTCAAGTTGTTTGATCTAAGTAAGGAAGAGATCATCCAAGTTATCCACAAGTCA 219
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 202 ATGAGTTTCAAGTTGTTTGATCTGAGTAAGGAAGAGATCATCGAAGTTATCCACAAGTCA 261
Query 220 TTTCCGAAGTTGTTGTACGAAGAGTCAAGAGTCATTGGAAGCTCGCGTGGCTGGATAGCT 279
||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 262 TTTCCAAAGTTGTTGTACCAAGATTCAAGAGTCATTGGAAGCTCGCGTGGCTGGATAGCT 321
Query 280 TTTATGAGCAAACATGATGGAACCGTACATCTAAGTGACGTGTTCAATCTCGGGTCCCTT 339
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 322 TTTATGAGCAAACATGATGGAACCGTACATCTAAGCGACGTGTTCAATCTCGGGTCCCTT 381
Query 340 AGAGTCATTACTCTGCCTCCTCTTCCTGATCCTATGTATCATCCTTCCACAGCCATCATA 399
||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||
Sbjct 382 AGAGTCATTACTCTGCCTCCTCTTCCTGATCCTATGTATGATCCTTCCAGAGTCATCATA 441
Query 400 AATGTCTCCTTATCCTATCCGCCAGACCAAGAAGATGATTATGCAATGTACATCAAGTTC 459
|||||||||||||||||||| |||||||||||||| ||||||| | ||||||||||||||
Sbjct 442 AATGTCTCCTTATCCTATCCCCCAGACCAAGAAGACGATTATGTAGTGTACATCAAGTTC 501
Query 460 TTATGCTCCGAAATATAT-TACTGTAGGCCTAATCACCACTCGCAATGGGTTCTATGTGA 518
||||||||||| |||||| | ||||||||||||||||||||||||||||||| ||| ||
Sbjct 502 TTATGCTCCGATATATATCT-CTGTAGGCCTAATCACCACTCGCAATGGGTTGGATGCGA 560
Query 519 TAGTAACGAAATCCACACAACCGCCTCTGATATCGTATATTCCCCAAGAAACCAAATGTT 578
| ||||||| |||||||| || |||||||||||||| ||||||||||||||||| |||||
Sbjct 561 TGGTAACGAGATCCACACGACGGCCTCTGATATCGTTTATTCCCCAAGAAACCAGATGTT 620
Query 579 ATTCCTCGTGATAATGGGAGCAAGTTTCTTGCT-TTCTTTTGA 620
|||||||||||||||||||||||||||||| | |||||||||
Sbjct 621 GTTCCTCGTGATAATGGGAGCAAGTTTCTTG-TGTTCTTTTGA 662
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41995746892
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5