BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357629
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53790.1 | Symbols: | Protein of unknown function (DUF295) ... 1314 0.0
> AT5G53790.1 | Symbols: | Protein of unknown function (DUF295)
| chr5:21843501-21845261 FORWARD LENGTH=1143
Length=1143
Score = 1314 bits (711), Expect = 0.0
Identities = 945/1057 (89%), Gaps = 20/1057 (2%)
Strand=Plus/Plus
Query 1 ATGTCTCTGCTTTTCGGCCTAGTTGCAAAACACTT-TGTTGAAGAAGGTGACAAGGCCCG 59
||||||||||||||||| ||||||||||||| || ||| |||||| ||||| || |||
Sbjct 1 ATGTCTCTGCTTTTCGGATTAGTTGCAAAACA-TTCTGTAGAAGAAAGTGACGCGGTCCG 59
Query 60 TTTTTGCTCATACCCACGACAAACCCCGTACATGTTGGTCAACTACAGTTT---TGATGA 116
||| |||||||||||||| |||||||| ||||||||| |||||| |||||| | |||
Sbjct 60 TTTCTGCTCATACCCACGGCAAACCCCATACATGTTGTTCAACTGCAGTTTGGGTAATGT 119
Query 117 AGACAAATATTTAAATATATCTACAAGTTACT-GTTTATTTAATCCAAGGAATGAAAAAA 175
||||| ||||| ||||||| ||| |||||| | | ||||||||||||||||||||||||
Sbjct 120 AGACAGATATTCAAATATAACTATAAGTTA-TAATATATTTAATCCAAGGAATGAAAAAA 178
Query 176 TCATCAAGATCATTGATAAAAATTTTCTAAAAAGTCTACC-GTTGTCCGAAGGATTCATC 234
|||||||||||| ||||||| |||| |||||||| |||| | | ||||| |||| ||
Sbjct 179 TCATCAAGATCACTGATAAAGTTTTTGTAAAAAGTTTACCGGAT-CCCGAACAATTCGTC 237
Query 235 TTCCTTGGAACCTCACGTGGCTGGGCAGTTTTTAAGTGTATGCATGATTCAATTATATTT 294
|| |||||||||||||| ||||||||| ||||| | |||| |||||| |||||||||||
Sbjct 238 TTACTTGGAACCTCACGAAGCTGGGCAGCTTTTACGCGTATACATGATACAATTATATTT 297
Query 295 CTCAGC-GACGTGTTTAATCCTTGGTCGTCAGAATCATCCACTAGAACCATT-GTGCTGC 352
|||| | |||||||||||||||||||| || ||||||||||| ||||||||| | ||||
Sbjct 298 CTCA-CTGACGTGTTTAATCCTTGGTCCTCCGAATCATCCACCAGAACCATTACT-CTGC 355
Query 353 CTCCATTGGTATTTAATGGCATGAATGCCAAAGCTTCATTGTCCACTCCTTTTCCCGACC 412
|||||||||||| ||||||||| || ||| | ||||||||||||||||| ||| |||
Sbjct 356 CTCCATTGGTATCTAATGGCATAAAGGCCTCCGTTTCATTGTCCACTCCTTCTCCAGACG 415
Query 413 AGGACAATGATTATATAGTGAGTGTCACCTTCTTTGGATCTAAACTTTATTACTGTATGC 472
| ||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||||
Sbjct 416 ACGACAATGATTATATAGTTAGTGTCAGCTTCTTTAGATCTAAACTTTATTATTGTATGC 475
Query 473 CTACTCGAGATTCAGAGTGGACTAGTATTAACATTCCATTTTCTTGCGATTTCGACTCAC 532
||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 476 CTAATCGAGATTCAGAGTGGACTAGTACTAACATTCCATTTTCTTGCGATTTCAACTCAC 535
Query 533 AAGTCGTTTATTCTCGGAAA-GACCAAATGTTTTACCTCCTCACTACTGGATGTGCCTAT 591
|||||||||| ||||| ||| | ||||||||||||||||||||| |||||||||||||||
Sbjct 536 AAGTCGTTTACTCTCGAAAACG-CCAAATGTTTTACCTCCTCACAACTGGATGTGCCTAT 594
Query 592 ATAGCTGCCTTGGATCTCAAAAACAATAAGGACCCTACCTTCCTTCAAATACAGTTTCAG 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 ATAGCTGCCTTGGATCTCAAAAACAATAAGGACCCTACCTTCCTTCAAATACAGTTTCAG 654
Query 652 AACTTCCCTTTGATACCACAACACGAGTGGGAGATATTGGCTTCATGTTCACGAAGTGAC 711
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 655 AACTTCCCTTTGATACCACAACACGAGTGGGAGATATTGGCTTCATGTTTACGGAGTGAC 714
Query 712 TATATTGCTGAGTCGTCTTCTGGCGAACGTTTCATTGTTCAATGGTATTTAACGTATGTG 771
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 715 TATATTGCTGAGTCGTCTTCTGGCGAACGTTTCATTGTTCAATGGTATTTGACGTATGTG 774
Query 772 GAGT--C-ATGGGGCAATGGGAACATCACTAGAGTAGTTAGAAAAACCAACCGATTCATG 828
| | | |||||||||||||||||| |||| |||| ||||| ||||||| ||||||||
Sbjct 775 GTGGAACCATGGGGCAATGGGAACATAACTAAAGTATTTAGAGAAACCAAGAGATTCATG 834
Query 829 GTGTTCAGGGAAGAAGAAGAGCATAAACTCCAAAGAAGTAAAATGATCGCTAACTACACA 888
|| |||| ||||||||||||||||||| |||||||||| |||||||| || |||||||||
Sbjct 835 GTCTTCAAGGAAGAAGAAGAGCATAAATTCCAAAGAAGGAAAATGATTGCAAACTACACA 894
Query 889 GAAAATATTGGAGATCTTTGCATTTTCATTGGGGAG-AATGATACATTTTGTTTAGAGGC 947
||||||||||||||||||||||||||||||||| || ||||| ||||||||||| || ||
Sbjct 895 GAAAATATTGGAGATCTTTGCATTTTCATTGGG-AGGAATGAGACATTTTGTTTGGAAGC 953
Query 948 AAGCAAGTATCCGGGACTCAGACCAAACTCTATATATTATGTTGGTCATGGCTTTGGTGT 1007
||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||
Sbjct 954 AAGCAAGTATCCGGGACTCAGGCGTAACTCTATATATTATACCGGTCATGGCTTTGGTGT 1013
Query 1008 TTACGATATCAGTAAGAAAAGAGTCCGTGAATATGAC 1044
|||||||||| |||||||||| ||||||||||||||
Sbjct 1014 TTACGATATCCGTAAGAAAAGCTTCCGTGAATATGAC 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54116187510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5