BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg357730

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G54750.2 | Symbols:  | Transport protein particle (TRAPP) co...   684    0.0  


> AT5G54750.2 | Symbols:  | Transport protein particle (TRAPP) 
component | chr5:22241481-22243721 FORWARD LENGTH=965
Length=965

 Score =  684 bits (370),  Expect = 0.0
 Identities = 394/406 (97%), Gaps = 0/406 (0%)
 Strand=Plus/Plus

Query  156  GGGATACAACATTGGAATCCGACTTATCGATGAGTTTCTAGCTAAATCTGGTGTTTCCAG  215
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  316  GGGATACAACATTGGAATCCGACTTATCGATGAGTTTCTAGCTAAATCTGGTGTTTCCAG  375

Query  216  ATGCGTTGACTTTAAGGAAACTGCTGAAATGATTGCCAAGGTGGGTTTCAAGATGTTCTT  275
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  376  ATGCGTTGACTTTAAGGAAACTGCTGAAATGATTGCCAAGGTGGGTTTCAAGATGTTCTT  435

Query  276  AGGGGTCACTGCATCAGTGACAAGCTGGGACGCAGATGGTACTTGCTGCAGTATAATCTT  335
            ||| ||||||||||||||||||||||||||| | || || ||||||||||||||||||||
Sbjct  436  AGGAGTCACTGCATCAGTGACAAGCTGGGACTCGGACGGGACTTGCTGCAGTATAATCTT  495

Query  336  GGAGGACAATCCGCTAGTTGATTTCGTGGAGCTTCCCGATACTTGCCAAGGTCTTTACTA  395
             ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  496  AGAGGACAATCCCCTAGTTGATTTCGTCGAGCTTCCCGATACTTGCCAAGGTCTTTACTA  555

Query  396  CTGCAATGTCTTAAGTGGAGTCATTAGAGGAGCTTTGGAAATGGTCTCGATGAAGACAGA  455
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  556  CTGCAATGTCTTAAGTGGAGTCATTAGAGGAGCTTTGGAAATGGTCTCAATGAAGACAGA  615

Query  456  AGTGACATGGACGCGTGATGTTCTTCGAGGGGATGATGCTTACGAGTTGCAAGTGAAGCT  515
            |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct  616  AGTGACATGGACGCGTGATGTTCTTCGAGGAGATGATGCTTATGAGTTGCAAGTAAAGCT  675

Query  516  ACTGAAACAAGTCGCTGAGGAATATCCTTACAAGGATGATGAATAA  561
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  676  ACTGAAACAAGTCGCTGAGGAATATCCTTACAAGGATGATGAATAA  721


 Score =  267 bits (144),  Expect = 1e-70
 Identities = 152/156 (97%), Gaps = 0/156 (0%)
 Strand=Plus/Plus

Query  1    ATGGCCCCGGTTGGTCCTCGTTCCGGTGATGCGATCTTCTCTAGCATTGATCGTGTGAAT  60
            ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  122  ATGGCTCCGGTTGGTCCTCGATCCGGTGATGCGATCTTCTCTAGCATTGATCGTGTGAAT  181

Query  61   GCGGAGTTGTTCACGTTGACGTATGGTGCAATTGTGCGTCAATTGCTTACTGACCTGGAA  120
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  182  GCGGAGTTGTTCACGTTGACGTATGGTGCTATTGTGCGTCAATTGCTTACTGACCTGGAA  241

Query  121  GAAGTTGAGGAAGTTAACAAACAGCTTGATCAAATG  156
            ||||| ||||||||||||||||||||||||||||||
Sbjct  242  GAAGTAGAGGAAGTTAACAAACAGCTTGATCAAATG  277



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26925502792


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5