BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357761
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55080.1 | Symbols: AtRAN4, RAN4 | ras-related nuclear prote... 828 0.0
AT5G20020.1 | Symbols: RAN2 | RAS-related GTP-binding nuclear p... 520 1e-146
> AT5G55080.1 | Symbols: AtRAN4, RAN4 | ras-related nuclear protein
4 | chr5:22351576-22353058 REVERSE LENGTH=669
Length=669
Score = 828 bits (448), Expect = 0.0
Identities = 518/552 (94%), Gaps = 4/552 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTTATCTAACGAACAAAACGTCGATTGT-CCAACCTTCAAGCTTCTCATTGTTGG 59
||||||||| ||||| ||||||||||||||| | ||||||||||| ||||||||||||||
Sbjct 1 ATGGCTTTACCTAACCAACAAAACGTCGATT-TACCAACCTTCAAACTTCTCATTGTTGG 59
Query 60 TGATGGAGGCTCTGGAAAAACCACCTTTTTGAAGAGACATCTGACTGGGGAATTTGAGCA 119
|||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 60 TGATGGAGGCACTGGAAAAACCACCTTTCTCAAGAGACATCTGACTGGGGAATTTGAGCA 119
Query 120 GAATCA-TGAACCTACTGTTGGGGTGGAGGTTTATCCTTTAGATTTCTTCACTAACCGCG 178
||| | |||||||||| |||| ||||| ||||||||||||||||||||||||||||||
Sbjct 120 TAAT-ACTGAACCTACTCTTGGTGTGGATATTTATCCTTTAGATTTCTTCACTAACCGCG 178
Query 179 GCAAGATCCGTTTTGAATGCTGGGATACTGCTGGACAAGAGAAGTATAGTGGTCTAAAGG 238
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 179 GCAAGATCCGTTTCGAATGCTGGGATACTGCTGGACAAGAGAAATATAGTGGTCTCAAGG 238
Query 239 ATGCATACTACATCCATGGTCAATGTGCAATAATCATGTTTGATGTCACCGCACGGAACA 298
|||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| |||
Sbjct 239 ATGCATACTACATCCATGGTCAATGTGCGATAATTATGTTTGATGTCACAGCACGGCACA 298
Query 299 CATACATGAACGTAGACACATGGTACCGTGATCTCCGCAGGGTATGCAAGAACATTCCGA 358
||||||||||| | || | |||||||||||||||||||||||| ||||||||||||||||
Sbjct 299 CATACATGAACATTGATAGATGGTACCGTGATCTCCGCAGGGTGTGCAAGAACATTCCGA 358
Query 359 TTGTTCTGTGTGGTAACAAAGTTGATGTGCCGAGTAGACAAATCAAGCCGAAGCATGTAT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 359 TTGTTCTGTGTGGTAACAAAGTTGATGTGCCGAGTAGACAAATCAAGCCGAAGCACGTAT 418
Query 419 CGTTCCACAGGAAGAAGGGTCTGCAGTACTATGAGATGTCTACGAAGAGCAATTGCAATT 478
||| ||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||
Sbjct 419 CGTACCACAGGAAGAAGTGTCTGCAGTACTATGAGATGTCTGCGAAGAACAATTGCAATT 478
Query 479 TTGAGAAACCCTTTTTGTATCTTGCTAGAAGACTTGCTGGAGACGCAAAACTATCCTTTG 538
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 479 TTGAGAAACCCTTTTTGTATCTTGCTAGAAGAATTGCTGGAGACGCAAAACTTTCCTTTG 538
Query 539 TGGAGTCACCAG 550
||||||||||||
Sbjct 539 TGGAGTCACCAG 550
> AT5G20020.1 | Symbols: RAN2 | RAS-related GTP-binding nuclear
protein 2 | chr5:6762724-6764671 FORWARD LENGTH=1049
Length=1049
Score = 520 bits (281), Expect = 1e-146
Identities = 489/588 (83%), Gaps = 20/588 (3%)
Strand=Plus/Plus
Query 1 ATGGCTTTATCTAACGAACAAAACGTCGATTGTCCAACCTTCAAGCTTC-TCATTGTTGG 59
|||||| || ||||| |||||| ||| |||| ||| | |||||||| || |||| |||||
Sbjct 94 ATGGCTCTACCTAACCAACAAACCGTAGATTATCCTAGCTTCAAGC-TCGTCATCGTTGG 152
Query 60 TGATGGAGGCTCTGGAAAAACCACCTTTTTGAAGAGACATCTGACTGGGGAATTTGAGCA 119
|||||||||| | || ||||| |||||| ||||||||||||| |||||||| |||||| |
Sbjct 153 TGATGGAGGCACAGGGAAAACGACCTTTGTGAAGAGACATCTTACTGGGGAGTTTGAGAA 212
Query 120 GAA-TCATGAACCTACTGTTGGGGTGGAGGTTTATCCTTTAGATTTCTTCACTAACCGCG 178
||| | ||||||||||| |||| ||||||||| ||||||| ||||||||||| ||| |||
Sbjct 213 GAAGT-ATGAACCTACTATTGGTGTGGAGGTTCATCCTTTGGATTTCTTCACAAACTGCG 271
Query 179 GCAAGATCCGTTTTGAATGCTGGGATACTGCTGGACAAGAGAAGTATAGTGGTCTAAAGG 238
| |||||||||||| | |||||||||||||||||||||||||| | | |||| || | ||
Sbjct 272 GAAAGATCCGTTTTTACTGCTGGGATACTGCTGGACAAGAGAAATTTGGTGGCCTTAGGG 331
Query 239 ATGCATACTACATCCATGGTCAATGTGCAATAATCATGTTTGATGTCACCGCACGGAACA 298
||| |||||||||||||||||||||||| ||||| |||||||| ||||| ||| || ||
Sbjct 332 ATGGATACTACATCCATGGTCAATGTGCGATAATAATGTTTGACGTCACAGCAAGGCTCA 391
Query 299 CATACATGAACGTAGAC-ACATGGTACCGTGATCTCCGCAGGGTATG-CAAGAACATTCC 356
|||||| ||| || | |||||| | |||||||| ||||||| || || ||||| ||
Sbjct 392 CATACAAGAATGT-TCCGACATGGCATCGTGATCTTTGCAGGGTGTGTGAA-AACATCCC 449
Query 357 GATTGTTCTGTGTGGTAACAAAGTTGATGTGCCGAGTAGACAAATCAAGCCGAAGCATGT 416
||||||||||||||| |||||||| |||||| || || ||| | ||| | ||||| ||
Sbjct 450 GATTGTTCTGTGTGGAAACAAAGTCGATGTGAAGAACAGGCAAGTGAAGGCAAAGCAAGT 509
Query 417 -ATCGTTCCACAGGAAGAAGGGTCTGCAGTACTATGAGATGTCTA-CGAAGAGCAATTGC 474
| | ||||||||||||||| |||||||||||||||||| || | | |||||||| | |
Sbjct 510 CA-CATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATC-AGCAAAGAGCAACTAC 567
Query 475 AATTTTGAGAAACCCTTT-TTGTATCTTGCTA-GAAGACTTGCTGGAGACGCA-AAACTA 531
|| || ||| || ||||| ||||| ||||||| ||| ||| ||||||||| || || ||
Sbjct 568 AACTTCGAG-AAGCCTTTCTTGTACCTTGCTAGGAA-ACTGGCTGGAGAC-CAGAACCT- 623
Query 532 TC-CTTTGTGGAGTCACCAGCTCTTGCTCCACCAGAAGCTCACATTGA 578
|| ||||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 624 TCACTTTGTGGAGTCACCAGCTCTTGCTCCACCAGAGGTTCACCTTGA 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34460624842
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5