BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg357809 Length=1533 Score E Sequences producing significant alignments: (Bits) Value AT5G55690.1 | Symbols: | MADS-box transcription factor family ... 1218 0.0 AT5G55680.1 | Symbols: | glycine-rich protein | chr5:22547735-... 250 3e-65 AT5G58890.1 | Symbols: AGL82 | AGAMOUS-like 82 | chr5:23780832-... 137 3e-31 > AT5G55690.1 | Symbols: | MADS-box transcription factor family protein | chr5:22548790-22549623 REVERSE LENGTH=834 Length=834 Score = 1218 bits (659), Expect = 0.0 Identities = 760/810 (94%), Gaps = 1/810 (0%) Strand=Plus/Plus Query 1 ATGGTAAAGATGGTGAAGATAATGAACGAGAAAACGAGGATAACAACTTACAAGAAGAGG 60 |||||||||||| || ||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 13 ATGGTAAAGATGACGAGGATAACGAACGAGAAAACGAGGATAACGACTTACAAGAAGAGG 72 Query 61 AAAGCATGTTTGTATAAGAAAGCCAGTGAGTTCTCAACACTCTGCGGCGTGGACACTTGT 120 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 73 AAAGCATGTTTGTATAAGAAAGCCAGTGAGTTCTCAACACTCTGCGGTGTGGACACTTGT 132 Query 121 CTCATTGTGTACGGCCCGAGCAGAGCAGGGGATGAGATGGTCGCGGAGCCAGAGCTATGG 180 ||||||||||||||||||||||||||||||| || |||||| |||||| ||| ||||| Sbjct 133 GTCATTGTGTACGGCCCGAGCAGAGCAGGGGACGAAATGGTCATGGAGCCCGAGTTATGG 192 Query 181 CCAAAGGATGAGAGGAAAGTCCGTGAAATCATAACCAAGTACAGGGACACTGTGTCAAGC 240 |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||| ||||||| Sbjct 193 CCAAAGGATGGGAGCAAAGTCCGTGAAATCTTAACCAAGTACAGAGACACTGCGTCAAGC 252 Query 241 AACTGCACCAAGACTTACACCGTGCAAGAATGCTTGGAGAAAAACAACACTAAAGAGGAG 300 | |||||||||||| |||||||||||||||||||||||||||||||||||||| | |||| Sbjct 253 AGCTGCACCAAGACATACACCGTGCAAGAATGCTTGGAGAAAAACAACACTAAGGTGGAG 312 Query 301 AAACCGAAGATTGCAATGGAGTATCCTACATGGGACAAAAAGCTTGACAAGTGTTCTTTA 360 ||||||| |||||| | ||||||||||||||||||||||||| ||| ||||||||||| Sbjct 313 AAACCGACGATTGCGACAAAGTATCCTACATGGGACAAAAAGCTCGACCAGTGTTCTTTA 372 Query 361 AATGATCTCTATTTGGTTTTCATGGCAGTAGAAAACAAGATCCAGGAGGCTACGAATAGG 420 ||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 373 AATGACCTCTATGCGGTTTTCATGGCAGTAGAAAACAAGATCCAAGAGGCTACGAATAGG 432 Query 421 AATCAGACATTTCCTGACACTACTTGTTGGTCTAATGACCAACTTGGTTTATGCGGTTAC 480 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 433 AATCAGACATTTCCTGACACTAGTTGTTGGTCTAATGACCAACTTGGTTTATGCGGTTAC 492 Query 481 AATCAACAATGTTTTGAGCAGTATCAGTTGTTTCCTCTGCCTACTATGGAGCACAACGGG 540 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 493 AATCGGCAATGTTTTGAGCAGTATCAGTTGTTTCCTCTGCCTACTATGGATTACAACGGG 552 Query 541 TTCTCTTTTTTCCCTTTTAATAACCAGATGACCTCAAATACCGCGGAAGTGGCTTCCTTC 600 ||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 553 CTCTCTTTCTTCCCTTTTAATAACCAGATGACCTCAAATACTGCGGAAGTGTCTTCCTTC 612 Query 601 TCGAATGTGACAGAGCCGATGATAGCAAACGGGCAAAACTTGTTTTACGGGAGTTGTTCG 660 |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| Sbjct 613 TCGAATGTGACAGAGCCGATGATAGCGAACGGGCAAAGCTTGTTTTACGGGAGTTGTTCG 672 Query 661 GATGGTCCATATGGTCCGGTGGTACAGAGGACAGCTTATATGGAGCCAATACAATGGGGT 720 |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 673 GATGGTCCATATGGTCCGATGGTACAGAGGACAGCTTATATGGAGCCAATACATTGGGGT 732 Query 721 TTAGGAAACAGTGTGTTCAACAATGTGAAGCAGTTCCAAGATTATCCATTCAGGTTTGCA 780 |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 733 TTAGGAAACAGTATGTTCAACAATGTGAAGCAGTTCCAAGATTATCCCTTCAGGTTTGCA 792 Query 781 CAAGTTAATGACTTGGAGGATTCAAG-AAA 809 ||||||||||| |||||||||||||| ||| Sbjct 793 CAAGTTAATGATTTGGAGGATTCAAGTAAA 822 > AT5G55680.1 | Symbols: | glycine-rich protein | chr5:22547735-22548361 REVERSE LENGTH=627 Length=627 Score = 250 bits (135), Expect = 3e-65 Identities = 262/320 (82%), Gaps = 21/320 (7%) Strand=Plus/Plus Query 1222 GGGGAAGCCGCCGGAGTA--AACACTA-GGGATTTCGATGGAGACTCAACGG-T-GCGA- 1275 ||||||| |||||||| | || || | |||||||| ||||||| ||| || | | || Sbjct 313 GGGGAAGTCGCCGGAG-ACGAA-AC-AGGGGATTTCAATGGAGAAGCAATGGTTCGAGAG 369 Query 1276 G--A-TGGGGAAATCGCCGGAGTAATAACAGGGGATTTCAAAGGAGACGTAATGGTCCGA 1332 | | |||||| ||| |||||||| |||||| |||||| | ||||| | | |||||| | Sbjct 370 GAAACAGGGGAATTCGTCGGAGTAAAAACAGGTGATTTCGATGGAGATGCAGTGGTCCAA 429 Query 1333 GATGTAACAGGAGGAGTCACCGGAGAAACAACAGGATATTTCGATGGAGTCACAAA---T 1389 |||| || | |||| ||||||||| |||||| || |||||||||||||||| Sbjct 430 GATG-----GG-GAAGTCGCCGGAGAAAGAACAGGGGATATCGATGGAGTCACAAAGGCC 483 Query 1390 GCCGGAGAGGAAACAGAGGATTTCTCCGGTGACTTCGTAGGCGAGGTTTGCTTCGTCGGA 1449 ||||||||||||||||||||||||||||| ||||| | |||||| ||||||||||||| | Sbjct 484 GCCGGAGAGGAAACAGAGGATTTCTCCGGAGACTTTGAAGGCGATGTTTGCTTCGTCGAA 543 Query 1450 GGTGGTTCCTCTGGAGGGTTTTGGATCACCGGAGGATGTAAAGTAGGCGTCAGAGGAGAC 1509 | |||| ||||||||| ||||||||||||||||||||||||||||| || | ||||||| Sbjct 544 GATGGTGCCTCTGGAGATTTTTGGATCACCGGAGGATGTAAAGTAGGAGTTAAAGGAGAC 603 Query 1510 GTCGACGGAGAAATAACACG 1529 ||||||||||||||||||| Sbjct 604 TTCGACGGAGAAATAACACG 623 > AT5G58890.1 | Symbols: AGL82 | AGAMOUS-like 82 | chr5:23780832-23781716 FORWARD LENGTH=885 Length=885 Score = 137 bits (74), Expect = 3e-31 Identities = 181/231 (78%), Gaps = 14/231 (6%) Strand=Plus/Plus Query 24 GAACGAGAAAACGAGGATAACAACTTACAAGAAGAGGAAAGC-ATGT-TTGTATAAGAAA 81 |||||| || || ||||||||||||||||||||||||||||| | || || || ||||| Sbjct 36 GAACGATAAGACAAGGATAACAACTTACAAGAAGAGGAAAGCTA-GTCTT-TACAAGAAG 93 Query 82 GC-CAGTGAGTTCTCAACACTCTGCGGCGTGGACACTTGTCTCATTGTGTACGG-CCCGA 139 || || ||||||||||| ||||||||||| || || |||||||| || ||||| ||| | Sbjct 94 GCACAA-GAGTTCTCAACTCTCTGCGGCGTCGAGACATGTCTCATCGTCTACGGTCCC-A 151 Query 140 -GCAGAGC-AGGGGATGAGATGGTCGCGGAGCCAGAGCTATGGCCAAAGGATGAGAGGAA 197 | || || | | ||| | || | | ||||||||| ||||||| ||||| |||| || Sbjct 152 CGAAG-GCTACCG-ATGTGGTGATTTCCGAGCCAGAGATATGGCCGAAGGACGAGACCAA 209 Query 198 AGTCCGTGAAATCATAAC-CAAGTACAGGGACACTGTGTCAAGCAACTGCA 247 |||| | | |||||| | |||||||| ||||| ||||| | || ||||| Sbjct 210 AGTCAGGGCCATCATA-CGCAAGTACAAAGACACAGTGTCGACCAGCTGCA 259 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75652221315 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5