BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357809
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55690.1 | Symbols: | MADS-box transcription factor family ... 1218 0.0
AT5G55680.1 | Symbols: | glycine-rich protein | chr5:22547735-... 250 3e-65
AT5G58890.1 | Symbols: AGL82 | AGAMOUS-like 82 | chr5:23780832-... 137 3e-31
> AT5G55690.1 | Symbols: | MADS-box transcription factor family
protein | chr5:22548790-22549623 REVERSE LENGTH=834
Length=834
Score = 1218 bits (659), Expect = 0.0
Identities = 760/810 (94%), Gaps = 1/810 (0%)
Strand=Plus/Plus
Query 1 ATGGTAAAGATGGTGAAGATAATGAACGAGAAAACGAGGATAACAACTTACAAGAAGAGG 60
|||||||||||| || ||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 13 ATGGTAAAGATGACGAGGATAACGAACGAGAAAACGAGGATAACGACTTACAAGAAGAGG 72
Query 61 AAAGCATGTTTGTATAAGAAAGCCAGTGAGTTCTCAACACTCTGCGGCGTGGACACTTGT 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 73 AAAGCATGTTTGTATAAGAAAGCCAGTGAGTTCTCAACACTCTGCGGTGTGGACACTTGT 132
Query 121 CTCATTGTGTACGGCCCGAGCAGAGCAGGGGATGAGATGGTCGCGGAGCCAGAGCTATGG 180
||||||||||||||||||||||||||||||| || |||||| |||||| ||| |||||
Sbjct 133 GTCATTGTGTACGGCCCGAGCAGAGCAGGGGACGAAATGGTCATGGAGCCCGAGTTATGG 192
Query 181 CCAAAGGATGAGAGGAAAGTCCGTGAAATCATAACCAAGTACAGGGACACTGTGTCAAGC 240
|||||||||| ||| ||||||||||||||| ||||||||||||| ||||||| |||||||
Sbjct 193 CCAAAGGATGGGAGCAAAGTCCGTGAAATCTTAACCAAGTACAGAGACACTGCGTCAAGC 252
Query 241 AACTGCACCAAGACTTACACCGTGCAAGAATGCTTGGAGAAAAACAACACTAAAGAGGAG 300
| |||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 253 AGCTGCACCAAGACATACACCGTGCAAGAATGCTTGGAGAAAAACAACACTAAGGTGGAG 312
Query 301 AAACCGAAGATTGCAATGGAGTATCCTACATGGGACAAAAAGCTTGACAAGTGTTCTTTA 360
||||||| |||||| | ||||||||||||||||||||||||| ||| |||||||||||
Sbjct 313 AAACCGACGATTGCGACAAAGTATCCTACATGGGACAAAAAGCTCGACCAGTGTTCTTTA 372
Query 361 AATGATCTCTATTTGGTTTTCATGGCAGTAGAAAACAAGATCCAGGAGGCTACGAATAGG 420
||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 373 AATGACCTCTATGCGGTTTTCATGGCAGTAGAAAACAAGATCCAAGAGGCTACGAATAGG 432
Query 421 AATCAGACATTTCCTGACACTACTTGTTGGTCTAATGACCAACTTGGTTTATGCGGTTAC 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 433 AATCAGACATTTCCTGACACTAGTTGTTGGTCTAATGACCAACTTGGTTTATGCGGTTAC 492
Query 481 AATCAACAATGTTTTGAGCAGTATCAGTTGTTTCCTCTGCCTACTATGGAGCACAACGGG 540
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 493 AATCGGCAATGTTTTGAGCAGTATCAGTTGTTTCCTCTGCCTACTATGGATTACAACGGG 552
Query 541 TTCTCTTTTTTCCCTTTTAATAACCAGATGACCTCAAATACCGCGGAAGTGGCTTCCTTC 600
||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 553 CTCTCTTTCTTCCCTTTTAATAACCAGATGACCTCAAATACTGCGGAAGTGTCTTCCTTC 612
Query 601 TCGAATGTGACAGAGCCGATGATAGCAAACGGGCAAAACTTGTTTTACGGGAGTTGTTCG 660
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 613 TCGAATGTGACAGAGCCGATGATAGCGAACGGGCAAAGCTTGTTTTACGGGAGTTGTTCG 672
Query 661 GATGGTCCATATGGTCCGGTGGTACAGAGGACAGCTTATATGGAGCCAATACAATGGGGT 720
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 673 GATGGTCCATATGGTCCGATGGTACAGAGGACAGCTTATATGGAGCCAATACATTGGGGT 732
Query 721 TTAGGAAACAGTGTGTTCAACAATGTGAAGCAGTTCCAAGATTATCCATTCAGGTTTGCA 780
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 733 TTAGGAAACAGTATGTTCAACAATGTGAAGCAGTTCCAAGATTATCCCTTCAGGTTTGCA 792
Query 781 CAAGTTAATGACTTGGAGGATTCAAG-AAA 809
||||||||||| |||||||||||||| |||
Sbjct 793 CAAGTTAATGATTTGGAGGATTCAAGTAAA 822
> AT5G55680.1 | Symbols: | glycine-rich protein | chr5:22547735-22548361
REVERSE LENGTH=627
Length=627
Score = 250 bits (135), Expect = 3e-65
Identities = 262/320 (82%), Gaps = 21/320 (7%)
Strand=Plus/Plus
Query 1222 GGGGAAGCCGCCGGAGTA--AACACTA-GGGATTTCGATGGAGACTCAACGG-T-GCGA- 1275
||||||| |||||||| | || || | |||||||| ||||||| ||| || | | ||
Sbjct 313 GGGGAAGTCGCCGGAG-ACGAA-AC-AGGGGATTTCAATGGAGAAGCAATGGTTCGAGAG 369
Query 1276 G--A-TGGGGAAATCGCCGGAGTAATAACAGGGGATTTCAAAGGAGACGTAATGGTCCGA 1332
| | |||||| ||| |||||||| |||||| |||||| | ||||| | | |||||| |
Sbjct 370 GAAACAGGGGAATTCGTCGGAGTAAAAACAGGTGATTTCGATGGAGATGCAGTGGTCCAA 429
Query 1333 GATGTAACAGGAGGAGTCACCGGAGAAACAACAGGATATTTCGATGGAGTCACAAA---T 1389
|||| || | |||| ||||||||| |||||| || ||||||||||||||||
Sbjct 430 GATG-----GG-GAAGTCGCCGGAGAAAGAACAGGGGATATCGATGGAGTCACAAAGGCC 483
Query 1390 GCCGGAGAGGAAACAGAGGATTTCTCCGGTGACTTCGTAGGCGAGGTTTGCTTCGTCGGA 1449
||||||||||||||||||||||||||||| ||||| | |||||| ||||||||||||| |
Sbjct 484 GCCGGAGAGGAAACAGAGGATTTCTCCGGAGACTTTGAAGGCGATGTTTGCTTCGTCGAA 543
Query 1450 GGTGGTTCCTCTGGAGGGTTTTGGATCACCGGAGGATGTAAAGTAGGCGTCAGAGGAGAC 1509
| |||| ||||||||| ||||||||||||||||||||||||||||| || | |||||||
Sbjct 544 GATGGTGCCTCTGGAGATTTTTGGATCACCGGAGGATGTAAAGTAGGAGTTAAAGGAGAC 603
Query 1510 GTCGACGGAGAAATAACACG 1529
|||||||||||||||||||
Sbjct 604 TTCGACGGAGAAATAACACG 623
> AT5G58890.1 | Symbols: AGL82 | AGAMOUS-like 82 | chr5:23780832-23781716
FORWARD LENGTH=885
Length=885
Score = 137 bits (74), Expect = 3e-31
Identities = 181/231 (78%), Gaps = 14/231 (6%)
Strand=Plus/Plus
Query 24 GAACGAGAAAACGAGGATAACAACTTACAAGAAGAGGAAAGC-ATGT-TTGTATAAGAAA 81
|||||| || || ||||||||||||||||||||||||||||| | || || || |||||
Sbjct 36 GAACGATAAGACAAGGATAACAACTTACAAGAAGAGGAAAGCTA-GTCTT-TACAAGAAG 93
Query 82 GC-CAGTGAGTTCTCAACACTCTGCGGCGTGGACACTTGTCTCATTGTGTACGG-CCCGA 139
|| || ||||||||||| ||||||||||| || || |||||||| || ||||| ||| |
Sbjct 94 GCACAA-GAGTTCTCAACTCTCTGCGGCGTCGAGACATGTCTCATCGTCTACGGTCCC-A 151
Query 140 -GCAGAGC-AGGGGATGAGATGGTCGCGGAGCCAGAGCTATGGCCAAAGGATGAGAGGAA 197
| || || | | ||| | || | | ||||||||| ||||||| ||||| |||| ||
Sbjct 152 CGAAG-GCTACCG-ATGTGGTGATTTCCGAGCCAGAGATATGGCCGAAGGACGAGACCAA 209
Query 198 AGTCCGTGAAATCATAAC-CAAGTACAGGGACACTGTGTCAAGCAACTGCA 247
|||| | | |||||| | |||||||| ||||| ||||| | || |||||
Sbjct 210 AGTCAGGGCCATCATA-CGCAAGTACAAAGACACAGTGTCGACCAGCTGCA 259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75652221315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5