BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357817
Length=5346
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55820.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Inner cen... 3230 0.0
> AT5G55820.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Inner centromere
protein, ARK-binding region (InterPro:IPR005635);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
chr5:22586287-22594035 FORWARD LENGTH=5481
Length=5481
Score = 3230 bits (1749), Expect = 0.0
Identities = 2132/2310 (92%), Gaps = 54/2310 (2%)
Strand=Plus/Plus
Query 3034 GGAGACATTCTCGAGCT-AGATTCTGTTTGGGATA-CAGTACATCATAAGGAAGAAGCCG 3091
||||||||||||||| | ||||| |||| | || | |||||||||||| ||| |||||||
Sbjct 3055 GGAGACATTCTCGAG-TCAGATTATGTTAGAGA-AGCAGTACATCATAGGGAGGAAGCCG 3112
Query 3092 CATGTCACAACCTCGATAACTATGACGTTGAGTTACAGAAGATGCTAGGATCTGCATCTT 3151
||||||||||| ||||||||||||||||||||||||||||| || | |||||||||||||
Sbjct 3113 CATGTCACAACGTCGATAACTATGACGTTGAGTTACAGAAGTTGATTGGATCTGCATCTT 3172
Query 3152 CAGATCACTATGGTGTTGAGTTACAAAAGATGATCGGATCCACATCTTCAGCTGAGTTAC 3211
|| |||||||| |||||||||||||||| ||||| ||||| |||| |||||||||||||
Sbjct 3173 CACATCACTATAGTGTTGAGTTACAAAAAATGATTGGATCTGCATCGTCAGCTGAGTTAC 3232
Query 3212 GATTTGAAGAGAGTTACTTATTCAAGGAAGCTGGATTGATGAGCCCTGCCTCACTTTCCT 3271
|||||||||||||||| ||| |||||||||||||||||||||| |||||||| |||||||
Sbjct 3233 GATTTGAAGAGAGTTATTTACTCAAGGAAGCTGGATTGATGAGTCCTGCCTCGCTTTCCT 3292
Query 3272 TCAGAACAGAACAGCCAAGTGTACAGAAGAGCCAAATTGCTCCAGATCACGGAGTTGGAT 3331
|||||||||||||| ||||||||||| ||| |||||||||||||||||| |||||||||
Sbjct 3293 ACAGAACAGAACAGCTAAGTGTACAGAGGAGTCAAATTGCTCCAGATCACAGAGTTGGAT 3352
Query 3332 CAGAAAAGATGAACTTTTTGCCATATGCTGGAGAAACCTCACATGGATTAGCTAGTTGCA 3391
||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 3353 CAGAAAATATTAACTTTTTTCCATATGCTGGTGAAACCTCACATGGATTAGCTAGTTGTA 3412
Query 3392 TTGTTCACGATTCAGATGA-TTCTCCTTGTTTTTCACCCTTGGGTTTGATAAGCTCAGAT 3450
|||||| ||| |||||| | ||||||||| || |||||||||||||||||||||||||
Sbjct 3413 TTGTTCGCGACTCAGAT-AGTTCTCCTTGCTTAACACCCTTGGGTTTGATAAGCTCAGAC 3471
Query 3451 GATGGAAGCCCCCCTGTTTTGGAGGGCTTTATAATCCAAACGGATGATGAAAATCAAAGC 3510
||||||||||||||||| |||||||| ||||| ||||| || ||||||||||||||||||
Sbjct 3472 GATGGAAGCCCCCCTGTCTTGGAGGGTTTTATTATCCAGACTGATGATGAAAATCAAAGC 3531
Query 3511 GGCTCCAAAAACCAGTTAAATCATGACAGCTTCCAACTTCCGAGGACTACAGCAGAAAGT 3570
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 3532 GGCTCCAAAAACCAGTTAAATCATGACAGCTTCCAACTTCCAAGAACTACAGCAGAAAGT 3591
Query 3571 GCAGCAATGATAGAGCAGATTTGCAAGTCTGCTTGCATGAACACTCCATCATTACAGCTG 3630
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 3592 GCAGCCATGATAGAGCAGATTTGCAAGTCTGCTTGCATGAACACTCCGTCATTACATCTG 3651
Query 3631 GCTAAAACATTTAAGTTGGATGGAAAACTAGACTTGGATCAGTCCATTTCAAACGAGCTG 3690
||||||||||||||||| |||| ||||||||||||||||||||| |||||| |||||||
Sbjct 3652 GCTAAAACATTTAAGTTCGATGAAAAACTAGACTTGGATCAGTCTGTTTCAACCGAGCTG 3711
Query 3691 TTTGATGGCATGTTTTTCAGTCAGAATCTCGAGGGTAGCTCTGTCTTTGATAACTTGGGG 3750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3712 TTTGATGGCATGTTTTTCAGTCAGAATCTCGAGGGTAGCTCTGTCTTTGATAACTTGGGG 3771
Query 3751 ATTAACCATGATTATACAGGAAGATCGTACACTGACTCTCTGCCTCTGTTTGGTGCTGGC 3810
||||||||||||||||||||||||||||||||||||||| ||||| | | | |||||
Sbjct 3772 ATTAACCATGATTATACAGGAAGATCGTACACTGACTCTTTGCCT--G---G-TACTGGC 3825
Query 3811 TCATCTGCTGAGGCTAGGAATCCTTGCACGTCACCAACTGAGAAGTTGTGGTATAGAAGT 3870
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 3826 TCATCTGCTGAGGCTAGGAATCCTTGCATGTCACCAACTGAGAAGCTGTGGTATAGAAGT 3885
Query 3871 TTGCAAAAGTCTTCCAGTTCAGAGAAACGAAGCAGTCAGACACCAGACCTACCTTGCATT 3930
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3886 TTGCAAAAGTCTTCCAGTTCAGAGAAACGAAGCACTCAGACACCAGACCTACCTTGCATT 3945
Query 3931 AGCGAAGAGAATGAGAATGTAGAAGAGGAGGCTGACAACTTATGTATGAACACTCCAAAG 3990
||||||||||||||||| |||||||||| ||||| |||||||||| |||||||||||||
Sbjct 3946 AGCGAAGAGAATGAGAACATAGAAGAGGAAGCTGAGAACTTATGTACGAACACTCCAAAG 4005
Query 3991 TCTATGAGGTCGGAGAAGCGAGGAAGCTCAATTCCGGACCTTCCTTGCATAGCTGAGGAG 4050
||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 4006 TCTATGAGGTCAGAGAAGCGAGGAAGTTCAATTCCGGAACTTCCTTGCATAGCTGAAGAG 4065
Query 4051 AATGAAAACATAGATGAGATATCTGAAGCTGTCAATGAAGGATCTGGGTT-TGAAAGGGA 4109
|| ||||||||||||||||||||||| ||||||||||||| |||||| || |||||||||
Sbjct 4066 AACGAAAACATAGATGAGATATCTGATGCTGTCAATGAAGCATCTGG-TTCTGAAAGGGA 4124
Query 4110 AAATGTCTCTGCTGAAAGGAAACCTCATGGTGATGATAATGAAGACCCTATGAAGTTTCT 4169
||||| ||||||||||||||||||| |||||||| ||||||||| ||||||||| ||||
Sbjct 4125 GAATGTGTCTGCTGAAAGGAAACCTCTTGGTGATGTTAATGAAGATCCTATGAAGCTTCT 4184
Query 4170 TCCATCTGTTTCTGAAGCCAAGATTTCTGTTGATAGACAGAGTCTAGACTCTGTCAATAC 4229
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||
Sbjct 4185 TCCATCTGTTTCTGAAGCCAAGATTCCTGCCGATAGACAGAGTCTAGACTCTGTCAGTAC 4244
Query 4230 TGCATTCAGCTTTTCCGCTAAGTGCAACAGTGTCAAAAGTAAAGTGGGAAAGCTGAGTAA 4289
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4245 TGCATTCAGCTTTTCAGCTAAGTGCAACAGTGTCAAAAGTAAAGTGGGAAAGCTGAGTAA 4304
Query 4290 CCGAAGATTCACGGGTAAAGGTAAAGAGAACCAAGGTGGAGCAGGTACTAGAAGAAATGT 4349
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 4305 CCGAAGATTCACGGGTAAAGGTAAAGAGAACCAAGGTGGAGCAGGTGCTAAAAGAAATGT 4364
Query 4350 TAAACCGCCTAGTAGCAGGTTCAGTAAGCCTAAGTTGTCTTGCAACTCGAGCTTGACAAC 4409
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 4365 TAAACCGCCTAGTAGCAGGTTCAGTAAGCCTAAGTTGTCTTGCAACTCGAGTTTGACAAC 4424
Query 4410 TGTAGGTCCACGATTACCAGAAAAAGAACCTAGGCACAACAACATTGTCTCAAACATCAC 4469
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 4425 TGTAGGTCCACGGTTACAAGAAAAAGAACCTAGGCACAACAACATTGTCTCAAACATCAC 4484
Query 4470 TTCGTTCGTTCCACTTGTGCAGCAGCAAAAACCAGCACCTGCACTAATTACAGGCAAGAG 4529
||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 4485 TTCGTTCGTTCCACTAGTGCAGCAGCAAAAACCAGCACCTGCACTAATTACAGGGAAAAG 4544
Query 4530 GGATGTCAAAGTAAAGGCCCTGGAGGCTGCTGAGGCTTCAAAACGTATTGCTGAACAGAA 4589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4545 GGATGTCAAAGTAAAGGCCCTGGAGGCTGCTGAGGCTTCAAAACGTATTGCTGAACAGAA 4604
Query 4590 AGAGAATGATCGTAAGATGAAGAAGGAAGCTATGAAGCTTGAACGGGCaagacaggaaca 4649
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 4605 AGAGAATGATCGTAAGCTGAAGAAGGAAGCTATGAAGCTTGAACGGGCAAAACAGGAACA 4664
Query 4650 ggaaaatctgagaaagcaggagatagagaagaaaaagaaagaagaagatcgaaagaaaaa 4709
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 4665 GGAAAATCTGAAAAAGCAAGAGATAGAGAAGAAAAAGAAAGAAGAAGATCGAAAGAAAAA 4724
Query 4710 ggaggcagaaatggcttggaagcaagagatggaaaagaaaaagaaggaagaagagcggaa 4769
|||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 4725 GGAGGCAGAAATGGCTTGGAAGCAGGAGATGGAAAAGAAAAAGAAAGAAGAAGAAAGGAA 4784
Query 4770 gagaaaggagTTTGAAATGGCTGATAGGAAAAGGCAGAGGGAAGAAGAAGACAAAAAGTT 4829
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 4785 GAGAAAGGAGTTTGAAATGGCTGATAGGAAAAGGCAGAGGGAAGAAGAAGACAAAAGGTT 4844
Query 4830 GAAGGAAGCTAAAA---GACAACGCATTGCCGAAATTCAGCGACAACAAAGAGAGGCTGA 4886
|||||||||||||| ||||||||||||| || |||| |||||||||||||||||||
Sbjct 4845 GAAGGAAGCTAAAAAAAGACAACGCATTGCAGATTTTCAAAGACAACAAAGAGAGGCTGA 4904
Query 4887 TGAAAAACTACAAGCTGAAAAAGAATTGAAAAGACAAGCTATGGAGGCGAGGACTAAA-G 4945
|||||| || ||||||||||||||||||||||||||||||||||| ||||| | |||| |
Sbjct 4905 TGAAAAGCTTCAAGCTGAAAAAGAATTGAAAAGACAAGCTATGGATGCGAGAA-TAAAAG 4963
Query 4946 CACAGAAGGTACTCAAAGAAGACCAAAGTAATGCTGAGAAAATCC-G--A-G-GA---C- 4996
|||| |||| ||||||||||||||||| |||||||||||||| || | | | || |
Sbjct 4964 CACAAAAGGAACTCAAAGAAGACCAAAATAATGCTGAGAAAA-CCAGGCAAGCGAATTCT 5022
Query 4997 A--A-----GCG---AGATCAAAGAGTAATTCCAGTGACGATACCAATGCTTCAAGAAGC 5046
| | ||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 5023 AGGATCCCAGCGGTGAGATCAAAGAGTAATTCTAGTGATGATACCAATGCTTCAAGAAGC 5082
Query 5047 TCTAGAGATACTGACTTCAAGGTGATAAGCAATCCAGGGAACATGTCTGAAGAA-CACAA 5105
|||||||| | ||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 5083 TCTAGAGAAAATGATTTCAAGGTGATAAGCAATCCAGGGAACATGTCTGAAGAAGC-CAA 5141
Query 5106 CATGGGGATTGAAGAAATGGAAGAGTCGTACAACATCTCTCCATACAAATGCTCGGATGA 5165
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 5142 CATGGGAATTGAAGAAATGGAAGAGTCGTACAACATCTCTCCATACAAATGCTCAGATGA 5201
Query 5166 CGAAGATGAAGAGGAAGACGACA-TGTC-A-A-----A-CAAAAAATTTGTTCCTACTTG 5216
||||||||||||||||||||||| || | | | | ||||||||| | |||||||||
Sbjct 5202 CGAAGATGAAGAGGAAGACGACAATGACGACATGTCCAACAAAAAATTCGCTCCTACTTG 5261
Query 5217 GGCCAGCAAGAGCAATGTCCGGCTCGCTGTCATTTCCCAACAAAATC-TTGATCCCAATA 5275
|||||||||||||||||| |||||||||||||||||||||||||| | |||||||| ||
Sbjct 5262 GGCCAGCAAGAGCAATGTACGGCTCGCTGTCATTTCCCAACAAAA-CATTGATCCCGATG 5320
Query 5276 TTA-TTTTCCCTGCAAAAAACGTCTGCGAT 5304
||| |||||| |||||||| || ||| |||
Sbjct 5321 TTACTTTTCC-TGCAAAAAGCGCCTGTGAT 5349
Score = 1947 bits (1054), Expect = 0.0
Identities = 1358/1504 (90%), Gaps = 24/1504 (2%)
Strand=Plus/Plus
Query 951 TCGTAGTAGTGCCAAAGCATTAAAAAGCCGTTCAAACAGTAGAAATGAGCTCAAACCTTC 1010
|||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 876 TCGTAGTAGTGCAAAAGCGTCAAAAAGCCGTTCAAACAGTAGAAATGAGCTCAAACCTTC 935
Query 1011 TCCGGGTGGAGATGTAGGCTTTGGGATTGCTTCTTTGAGGTCTGATAGTGTGAGTGAGAT 1070
||||||||| ||| ||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 936 TCCGGGTGGTGATATAGGCTTTGGGATTGCTTCATTAAGGTCTGATAGTGTTAGTGAGAT 995
Query 1071 TAAGTTATTTAAGCATGATGAGAATGATGAAGAGTGTCAAGACGAAGTGGAGAATAGTAA 1130
|||||||||||||||||||| |||||||||||||||| ||| ||||||||||| |||||
Sbjct 996 AAAGTTATTTAAGCATGATGAAAATGATGAAGAGTGTCGAGAAGAAGTGGAGAACAGTAA 1055
Query 1131 TTCTCAAGGTAAAGGAGGGGGTCAGTGTATTAA-ACGTAGTTTAACTACAGAGTCTCTTA 1189
||||||||||||| |||| | ||| |||||||| | |||| || ||||||||||| |||
Sbjct 1056 TTCTCAAGGTAAAAGAGGAGATCAATGTATTAAGAT-TAGTGTACCTACAGAGTCTTTTA 1114
Query 1190 CCTTGCATCA-GAAAGTGGCTTCGGTG-CAAAAATCTTCGAGTGG-GAATGCTTATGCTT 1246
|||||||||| ||| |||| ||| ||| ||| | ||||| ||||| || |||||||||||
Sbjct 1115 CCTTGCATCATGAA-GTGGATTCAGTGTCAATA-TCTTCAAGTGGTGA-TGCTTATGCTT 1171
Query 1247 CTATTGTACCAGAATCTCTACTCGATTCTGGTCATGCGAAAGACATTGATATATTACAGT 1306
||||||||||||||| ||||||||| |||||||||| ||| |||||||||||||||||||
Sbjct 1172 CTATTGTACCAGAATGTCTACTCGAGTCTGGTCATGTGAATGACATTGATATATTACAGT 1231
Query 1307 CCATTGAGACACTTGATGAAGTATCTGCCAAAGTAGATGAGCAAGTGGATGATCCCAAAA 1366
||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1232 CCATTGAGACAATTGATGAAGCGTCTGGCAAAGTAGATGAGCAAGTGGATGATCCCAAAA 1291
Query 1367 GCAGAAGTTGCAAGGAAACAGCTTATCTCGACGGAAGTACAAGATCTAAAAGCTCAAGTC 1426
||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1292 GCAGAAGTTGCTATGAAACAGCTTATCTCGATGGAAGTACAAGATCTAAAAGCTCAATTC 1351
Query 1427 AAGGTATCTCCAAGAGGAAACATCAAAAATCAAGCAACTCCTTTTCTGGTAACTTTCCAT 1486
||| || ||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1352 AAGATAACTCCAAGAGGAAACATCAAAAATCAAGCAACTCCTTTTCTGGTAATTTTCTGT 1411
Query 1487 CAATAAATTCAAATCCCTCTCACTGGGCTGATCATGAAGTAGAATTACCCCAAGTAATAC 1546
|| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1412 TAACAAATTCAAATCCCTCTCACTGGGCTGATCATGAAGTAGAATTACCTCAAGCAATAA 1471
Query 1547 CTATGACTAATGAAGTTTCTATGGTGACAGATGCTGGAACGAGCATCTTTCACTCTGAAA 1606
||| ||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1472 CTACGACTAGTGAAGTTTCTATGGTGACAGATGCGGGAACGAGCATCTTTCAGTCTGAAA 1531
Query 1607 TCATTTCAAGATCCAGAAGTAATGCTCGAGAAAATAGATCCAAGATCGAGCATTCAGGCT 1666
||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1532 TCATTGCAAGATCTAGAAGTAATGCTCGAGAAAATAGATCCAAGACCGAGCATTCAGGCT 1591
Query 1667 CTGTTGAGGATTCTGCAATTGACGTGGAGCCAAGAGATTCAGTTTCAGTACTGCAAGGTA 1726
|||||||| |||| ||||| || ||||||||||||||||| || |||||||||||||||
Sbjct 1592 CTGTTGAGTCTTCTTCAATTAACTTGGAGCCAAGAGATTCAATTCCAGTACTGCAAGGTA 1651
Query 1727 GCCATGTAAAAGATTCACTGAATCCCTCTACTGTTGATGTTGAAGGTTTAGTAGTT-A-- 1783
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
Sbjct 1652 GCCATGTAAAAGATTCACTGAATCCCTCTAGTGTTGATGCTGAAGGTTTAGTAGTTGAAA 1711
Query 1784 -T-T-ACTAGCAACGATCAATCAGAAGAAAAGGGTGAATATGTTGACACTAACAGATGTT 1840
| | ||||||| |||||||||| |||||| |||||||| ||||||||||||||||||||
Sbjct 1712 ATATTACTAGCAGCGATCAATCAAAAGAAACGGGTGAATGTGTTGACACTAACAGATGTT 1771
Query 1841 CAAGTGCTGAAAGGGTAAGCCAAACTGGCATCTCCCCAGATGAGACCTTATGTGTGGGTG 1900
|||||||||||||||||||||||||||| |||||||||||||||||| || || |||||
Sbjct 1772 CAAGTGCTGAAAGGGTAAGCCAAACTGGTATCTCCCCAGATGAGACCACATTTGCGGGTG 1831
Query 1901 CAATCCAAGACTCTATATCCAAGACCAAGCTTTTGGGCTTTGTTGAGTCGTCTTCAGTTG 1960
|||||||||||||||||||| ||| | |||||||| ||||||||||||| |||||| |||
Sbjct 1832 CAATCCAAGACTCTATATCCCAGATCGAGCTTTTGAGCTTTGTTGAGTCCTCTTCAATTG 1891
Query 1961 AACCGCAGTCTAGACACTCAGT-AATGCAATCAGACGATGAAAGTGTATTTTTGAAGCCT 2019
||| |||||| ||||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct 1892 AACTGCAGTCGAGACACTCAGTCAA-GCAATCAGACGATGAAAGTGTATTGTTGAAGCCC 1950
Query 2020 ATTGCTGTTACTGGTGAAGTTTTATTAGTGGAGGAAGATAACAATGGTGTA-TCGATTGA 2078
|| |||||| ||| |||| ||||||||||||||||||||||||||||| | || | |||
Sbjct 1951 GTTACTGTTAATGGCGAAGCTTTATTAGTGGAGGAAGATAACAATGGTG-AGTCAACTGA 2009
Query 2079 AATTAGCAGTATTTCAAGTTCTAGAAGTTTAAACCAAACAGACATCACGGTAGTTGAGCC 2138
||||||| ||||||||| ||||||||||||| |||||| ||||||||||||||| |||
Sbjct 2010 AATTAGCGGTATTTCAAAATCTAGAAGTTTAAGCCAAACTGACATCACGGTAGTTTTGCC 2069
Query 2139 ATTGGTGGTTGAAGCTATTCTTCAGGAAAGCGGTA-TGCCGGCAAACTTGATTAACCATT 2197
| ||||||| ||| |||||||| | ||||| |||| | |||| ||| |||||| ||||||
Sbjct 2070 AGTGGTGGTGGAATCTATTCTTAATGAAAGTGGTACT-CCGGAAAAATTGATTGACCATT 2128
Query 2198 CTATAAGATGTGATATTAGTTGTGGGTCCAAGGAAGTGCAGCCACTGGGTTCATTGACCC 2257
||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 2129 CTAAAAGATGTGATATCAGTTGTGGGTCCAAGGAAGTACAGCCACTGGGTTCATTGACCG 2188
Query 2258 AAGCTGGG-AGTAGCCAATGCCATGAAAGAATTAGTAGGCCAAGAAGCTCAGC-CATAGA 2315
||| |||| |||| |||| |||||| || |||||||||| ||||||||||| | ||||||
Sbjct 2189 AAG-TGGGGAGTAACCAAAGCCATGGAATAATTAGTAGGGCAAGAAGCTCA-CTCATAGA 2246
Query 2316 AGAGGAATCAGCAAATGAATATAAGGCTCTTTCTGTTTGCTCTGATCATAAATCGGCTGA 2375
|||||||||||||||||| |||||||||||||||| | | ||| ||||||||||||||||
Sbjct 2247 AGAGGAATCAGCAAATGACTATAAGGCTCTTTCTGATGGGTCTAATCATAAATCGGCTGA 2306
Query 2376 CAAGCAGCTTGAAGTTAGAGAAGGAAATTCATCGCTGAGAACCCCTGATCGCCCTGTTTT 2435
||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2307 CAAACAACTTGAAGTTAGAGAAGGAAATTCATTGCTGAGAACCCCTGATCGCCCTGTTTT 2366
Query 2436 TGTG 2439
||||
Sbjct 2367 TGTG 2370
Score = 1406 bits (761), Expect = 0.0
Identities = 890/953 (93%), Gaps = 6/953 (1%)
Strand=Plus/Plus
Query 3 GGCGAATGTGAAGATGGAGAATCATTTCGTTCAGATCTTTGAGAGGAAGAGGCGAATCGT 62
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 129 GGCGAATGTGAAGATTGAGAATCTTTTCGTTCAGATCTTTGAGAGGAAGAGGCGAATCGT 188
Query 63 CGAGCAGG-TCAAGCAACAAGTAGATCTCTATGACCACCATTTAGCCTCCAAATGCCTAC 121
|||||||| || ||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 189 CGAGCAGGTTC-AGCAACAAGTAGATCTCTATGACCAGCATTTAGCTTCCAAATGCCTAC 247
Query 122 TTGCCGGAGTATCTCCTCCGTCGTGGCTCTGGTCTCCGTCTCTACCTTCCCAAACCTCCG 181
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 248 TCGCCGGAGTATCTCCTCCGTCGTGGCTCTGGTCTCCGTCTCTACCTTCCCAAACTTCCG 307
Query 182 AGTTGAATAAGGAGGAGATTATATCAGAACTTCTATTTCCTCCATCCAGACCTTCCATCA 241
|||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 308 AGTTAAATAAGGAGGAGATTATATCAGAACTTCTATTTCCTTCATCAAGACCTTCCATCG 367
Query 242 TTTGTCCTAGCAATCGGCCCTTTTCATATCAACGGCCTGTCAGTTTTCTAGCTGACAATG 301
|||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 368 TTTGTCCTAGCAGTCGTCCCTTTTCATACCAACGGCCTGTCAGGTTTCTAGCTGACAATG 427
Query 302 TAGTAAGACAAGACCTGACGTCTATGGTAAATAACCCGCTAGAAGAGCAGTTGCTTGAAG 361
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 428 TAGTAAGACAAGACCTGACCTCTGTGGTAAATAACCCGCTAGAAGAGCAGTTGCTTGAAG 487
Query 362 AGGAACTTCAACACGACCTCTCACACAACTTAGTCAGACGGGTTTCAAATCATTCTCACG 421
|||||| |||||| |||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 488 AGGAACCGCAACACAACCTCTCACACAACTTAGTCAGACAAGTTTCGAATCATTCTCATG 547
Query 422 AGCAGGGTGCTAATATTGCATCTCCTAGAGATGTCCATGAGAAAGAGAGACTGCCAGAAA 481
|||||| || |||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 548 AGCAGGATGTTAATATTGCATCTCCTAGAGATGTACATGAGAAAGAGAGATTGCCAGAAA 607
Query 482 GTGTCTCAATCGGTTGCAAAGAGAATCAAAGTTGTCCATCTCTCGAATACTCCCAGAATC 541
|||||||||||| ||||| |||||||||||||||| |||||| |||| ||||| ||||||
Sbjct 608 GTGTCTCAATCGATTGCAGAGAGAATCAAAGTTGTTCATCTCCCGAACACTCCAAGAATC 667
Query 542 AGAGAGTTGAAACTAATCTTGACGCTACATCTCCTGGATGTAGCCTA-GGAAAAAGGGTT 600
|||||||||||||||||||||| |||||||||||||||||||||| | || |||| ||||
Sbjct 668 AGAGAGTTGAAACTAATCTTGATGCTACATCTCCTGGATGTAGCCAAGGGGAAAA-GGTT 726
Query 601 CCCAAAAGTGTCTCAACTACTGGTTGTAAGCGGAAACCATCACCTCTCGGTTATTTTCAA 660
|||||| ||||||||||||||||||||||||||||| | ||| |||| ||||||| ||||
Sbjct 727 CCCAAATGTGTCTCAACTACTGGTTGTAAGCGGAAATCTTCATCTCTTGGTTATTGTCAA 786
Query 661 GATGAAACTGAACCAGACACTAGCCTTGACCCTGGATTATCACTTGCTAAGATGCAGAGA 720
|| |||| ||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 787 GAGGAAATTGAACCAGACACTTGCATTGACCCTGGATTATCACTTGCTAAGATGCAGAGA 846
Query 721 TCAAGGTCACGTCAAAAAGCTTTGGAGCTTCGTAGTAGTGCCAAAGCGTCGAAAAGCCGT 780
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 847 TCAAGGTCACGTCAAAAAGCTTTGGAGCTTCGTAGTAGTGCAAAAGCGTCAAAAAGCCGT 906
Query 781 TCAAACAGTAGAAATGAGCTCAAACATTCTCCGGGTGGAGATATAGGCTTTGGGATTGCT 840
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 907 TCAAACAGTAGAAATGAGCTCAAACCTTCTCCGGGTGGTGATATAGGCTTTGGGATTGCT 966
Query 841 TCTTTAAGGTCTGATAGTGTTAGTGAGATAAAGTTATTTAAGCATGATGAGAATGATGAA 900
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 967 TCATTAAGGTCTGATAGTGTTAGTGAGATAAAGTTATTTAAGCATGATGAAAATGATGAA 1026
Query 901 GAATGTCGAGAC-AACGTAGAGAACAGTAATTCTCAAGGTAAAGGAGGGGATC 952
|| |||||||| || || |||||||||||||||||||||||| |||| ||||
Sbjct 1027 GAGTGTCGAGAAGAA-GTGGAGAACAGTAATTCTCAAGGTAAAAGAGGAGATC 1078
Score = 636 bits (344), Expect = 0.0
Identities = 456/508 (90%), Gaps = 15/508 (3%)
Strand=Plus/Plus
Query 2477 ACAACTTCGATGAGGTTCCAGTGAATAGTCGAGAAAAATCAATG-ATGGAGAAGGTCCCC 2535
||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||
Sbjct 2372 ACAACTTCGATGAGGTTCCAGAGAATAGTCGAGAAAAATCAA-GCATGGAGAAGGTCCCC 2430
Query 2536 ACACCATCACCCGCTGCAAGGGTATTTGATGTCCCATCTCTCACTGAATCTGGAGTAAAT 2595
|| ||| ||||| | |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 2431 ACCCCAGCACCCACCGCAAGGGTGTTTGATGTCCCATCTCTCACTGATTCTGGAGTAAAT 2490
Query 2596 CTCTCGGCAGACAATGAAAT---TG--A--G--GATCACAATGGGTTAAAAATAGAAATG 2646
| |||||| |||||||||| || | | ||||||||||||||||| |||||||||
Sbjct 2491 TTATCGGCAAACAATGAAATGAATGACATTGAAGATCACAATGGGTTAAACATAGAAATG 2550
Query 2647 GTACCAGAAATGGAATCGCATGCAAGCCACTCTGGCTTAAAAGTGGGAGAGAATGAACCT 2706
||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 2551 GTAGCAGAAATGGAATCGTATGCAAGCCACCCTGGCTTAAAAGTGGGAGAGAATGAACCT 2610
Query 2707 ACAGAGTCAAATACATTCACTGGCCATATAGATGCGTTGAAAAAGAGATCTCAACATGAA 2766
||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||
Sbjct 2611 ACAGAGTCAAATACATTCACTGGCCATATAGATGCATTGACAAAGAGACCTCAACATGAA 2670
Query 2767 ACATCCTTTCAAAAAGGTGTTCCCCCAGTTAAAAGAGATGTAACTTGTACAGAAACAGAT 2826
||||||| | |||||| |||||||||| |||||||||||||||| ||||||||| |||||
Sbjct 2671 ACATCCTCTGAAAAAGCTGTTCCCCCAATTAAAAGAGATGTAACATGTACAGAAGCAGAT 2730
Query 2827 GAGTCTCATGATCCAAAGAGCTCTATTCA-GATATTTTTCTGCTCTAGTTCCTCCATGGG 2885
|| | |||||||| | ||||| | ||||| || ||||||||||||||||||| |||||||
Sbjct 2731 GAATGTCATGATCTAGAGAGCCCGATTCAAGA-ATTTTTCTGCTCTAGTTCCCCCATGGG 2789
Query 2886 GGGTTCCAGGCGGCAGAATAAGCGGAGAAGAACCCTGGAAAAACCAACTAGTAGAGTGCT 2945
|||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| |||
Sbjct 2790 GGGTTCCATGCGGCAGAATAAGCGGAGAAGAATCCTGGAAAAACCAACTAGAAGAGAGCT 2849
Query 2946 TTCGTCTAGCCCAGGGGTGAAA-ATTCT 2972
|||||| || ||||||| || | |||||
Sbjct 2850 TTCGTCAAGTCCAGGGG-GAGACATTCT 2876
Score = 244 bits (132), Expect = 5e-63
Identities = 172/191 (90%), Gaps = 4/191 (2%)
Strand=Plus/Plus
Query 3034 GGAGACATTCTCGAGCT-AGATTCTGTTTGGGATA-CAGTACATCATAAGGAAGAAGCCG 3091
||||||||||||||| | ||||| |||| |||| | |||||||||||| ||| |||||||
Sbjct 2866 GGAGACATTCTCGAG-TCAGATTATGTTAGGGA-AGCAGTACATCATAGGGAGGAAGCCG 2923
Query 3092 CATGTCACAACCTCGATAACTATGACGTTGAGTTACAGAAGATGCTAGGATCTGCATCTT 3151
||||||||||| ||||||||||||||||||||||||||||| || | |||||||||||||
Sbjct 2924 CATGTCACAACGTCGATAACTATGACGTTGAGTTACAGAAGTTGATTGGATCTGCATCTT 2983
Query 3152 CAGATCACTATGGTGTTGAGTTACAAAAGATGATCGGATCCACATCTTCAGCTGAGTTAC 3211
|| |||||||| |||||||||||||||| ||||| ||||| |||| |||||||||||||
Sbjct 2984 CACATCACTATAGTGTTGAGTTACAAAAAATGATTGGATCTGCATCGTCAGCTGAGTTAC 3043
Query 3212 GATTTGAAGAG 3222
|||||||||||
Sbjct 3044 GATTTGAAGAG 3054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 266837969817
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5