BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg357880

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G48160.1 | Symbols:  | signal recognition particle 19 kDa pr...   732    0.0  


> AT1G48160.1 | Symbols:  | signal recognition particle 19 kDa 
protein, putative / SRP19, putative | chr1:17786545-17789024 
REVERSE LENGTH=1042
Length=1042

 Score =  732 bits (396),  Expect = 0.0
 Identities = 424/438 (97%), Gaps = 0/438 (0%)
 Strand=Plus/Plus

Query  1    ATGGATAGTGGAACGGTCAACATCAAGAAATGGGTAGTGATATATCCAGTCTATATTAAC  60
            ||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct  371  ATGGATAGTGGAACGATAAACATTAAGAAATGGGTAGTGATATATCCAGTCTATATTAAC  430

Query  61   TCAAAGAAAACTGTAGCTGAGGGAAGAAGAATCAGTGTGAGTAAATCATGTGAGAATCCG  120
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct  431  TCAAAGAAAACTGTAGCTGAGGGAAGAAGAATCAGTGTGAGTAAGTCATGTGAGAACCCG  490

Query  121  AATTGCATTGAGATCAGTGATTGTTGCAAGCATTTGAAACTCCCTAGTGCCGTCGAGATT  180
            |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  491  AATTGCATCGAGATTAGTGATTGTTGCAAGCATTTGAAACTCCCTAGTGCCGTCGAGATT  550

Query  181  GACAAAGCATACCCGCGCGATTTCATGCAAGTAGGGAGAGTGAGGGTGCAATTGAAAAGG  240
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct  551  GACAAAGCATACCCGCGAGATTTCATGCAAGTAGGGAGAGTGAGGGTGCAATTGAAAAGA  610

Query  241  GAAGATGGGACTTTACTCAATCCAGCTATTACTTCAAGGAAGCATCTGCTGCAGAAAATT  300
            |||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct  611  GAAGATGGTACTTTACTCAATCCAGCCATTACTTCAAGGAAGCATCTGATGCAGAAAATT  670

Query  301  GCAGAGTTGGTACCAAGACATCCAGAGAGAGTGAAGAAGCAGGAAGCTCAGAAAGCGAAG  360
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  671  GCAGAGTTGGTACCAAGACATCCAGAGAGAGTAAAGAAGCAGGAAGCTCAGAAAGCGAAG  730

Query  361  AAGCAGGAACCTCAGGCCACAACTTCATCCTCTGGAACTTCTTCAAAGTCAGGCAAAGGT  420
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  731  AAGCAGGAACCTCAGGCCACAACTTCAACCTCTGGAACTTCTTCAAAGTCAGGCAAAGGT  790

Query  421  GGCAAGAAGAAGAGATAA  438
            ||||||||||||||||||
Sbjct  791  GGCAAGAAGAAGAGATAA  808



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20810848086


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5