BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg357880 Length=438 Score E Sequences producing significant alignments: (Bits) Value AT1G48160.1 | Symbols: | signal recognition particle 19 kDa pr... 732 0.0 > AT1G48160.1 | Symbols: | signal recognition particle 19 kDa protein, putative / SRP19, putative | chr1:17786545-17789024 REVERSE LENGTH=1042 Length=1042 Score = 732 bits (396), Expect = 0.0 Identities = 424/438 (97%), Gaps = 0/438 (0%) Strand=Plus/Plus Query 1 ATGGATAGTGGAACGGTCAACATCAAGAAATGGGTAGTGATATATCCAGTCTATATTAAC 60 ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| Sbjct 371 ATGGATAGTGGAACGATAAACATTAAGAAATGGGTAGTGATATATCCAGTCTATATTAAC 430 Query 61 TCAAAGAAAACTGTAGCTGAGGGAAGAAGAATCAGTGTGAGTAAATCATGTGAGAATCCG 120 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 431 TCAAAGAAAACTGTAGCTGAGGGAAGAAGAATCAGTGTGAGTAAGTCATGTGAGAACCCG 490 Query 121 AATTGCATTGAGATCAGTGATTGTTGCAAGCATTTGAAACTCCCTAGTGCCGTCGAGATT 180 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 491 AATTGCATCGAGATTAGTGATTGTTGCAAGCATTTGAAACTCCCTAGTGCCGTCGAGATT 550 Query 181 GACAAAGCATACCCGCGCGATTTCATGCAAGTAGGGAGAGTGAGGGTGCAATTGAAAAGG 240 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 551 GACAAAGCATACCCGCGAGATTTCATGCAAGTAGGGAGAGTGAGGGTGCAATTGAAAAGA 610 Query 241 GAAGATGGGACTTTACTCAATCCAGCTATTACTTCAAGGAAGCATCTGCTGCAGAAAATT 300 |||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 611 GAAGATGGTACTTTACTCAATCCAGCCATTACTTCAAGGAAGCATCTGATGCAGAAAATT 670 Query 301 GCAGAGTTGGTACCAAGACATCCAGAGAGAGTGAAGAAGCAGGAAGCTCAGAAAGCGAAG 360 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 671 GCAGAGTTGGTACCAAGACATCCAGAGAGAGTAAAGAAGCAGGAAGCTCAGAAAGCGAAG 730 Query 361 AAGCAGGAACCTCAGGCCACAACTTCATCCTCTGGAACTTCTTCAAAGTCAGGCAAAGGT 420 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 731 AAGCAGGAACCTCAGGCCACAACTTCAACCTCTGGAACTTCTTCAAAGTCAGGCAAAGGT 790 Query 421 GGCAAGAAGAAGAGATAA 438 |||||||||||||||||| Sbjct 791 GGCAAGAAGAAGAGATAA 808 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20810848086 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5