BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg357882

Length=510
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G56560.1 | Symbols:  | FBD, F-box and Leucine Rich Repeat do...   544    4e-154


> AT5G56560.1 | Symbols:  | FBD, F-box and Leucine Rich Repeat 
domains containing protein | chr5:22899724-22901985 FORWARD 
LENGTH=1824
Length=1824

 Score =  544 bits (294),  Expect = 4e-154
 Identities = 372/410 (91%), Gaps = 4/410 (1%)
 Strand=Plus/Plus

Query  103   ACTCCATATCCTGCTTGCACTGTTTTCTCGTCTCTTAAACATCTAGAGCTATGTACATGT  162
             |||||||||||||| |||||||||||||| ||||||||| |||||||||||||||| |||
Sbjct  1417  ACTCCATATCCTGCATGCACTGTTTTCTCCTCTCTTAAATATCTAGAGCTATGTACTTGT  1476

Query  163   TCTGCGGGATGGGCAAATCTACTTGCTTGTATACTCAATGCCGCGCAAGAACTTCGATCT  222
             |||||| |||||||||||||| |||||||||||||||| ||||| | |||||||||||||
Sbjct  1477  TCTGCGAGATGGGCAAATCTATTTGCTTGTATACTCAACGCCGCTCCAGAACTTCGATCT  1536

Query  223   CTAAAGCTTAAGTCGAAACAT-AGTGCCAAATACAGTGATCCGATGAGCCTCTGGAAAGA  281
             || |||||||||||||||||| | |  ||| |||| ||||||||||| ||||||| ||||
Sbjct  1537  CTCAAGCTTAAGTCGAAACATAAAT-TCAATTACAATGATCCGATGACCCTCTGGGAAGA  1595

Query  282   ACCAACAGTTGTTCCTGAATGTTTATTGAAGCACCTAGAGATCTTGGAATGGAGACAATA  341
             |||| |||||||| || ||||||||| | |||| || |||||||| ||||||||||||||
Sbjct  1596  ACCAGCAGTTGTTGCTAAATGTTTATCGGAGCATCTCGAGATCTTTGAATGGAGACAATA  1655

Query  342   TGAAGGCACAGAGCAAGAGATGAATGTGGCTGAG-TACACACTAGCAAACGCTACTTGTC  400
             |||||||||||||||||||| ||||||||| | | ||||  |||||||||||||| ||||
Sbjct  1656  TGAAGGCACAGAGCAAGAGAGGAATGTGGCAG-GCTACATTCTAGCAAACGCTACATGTC  1714

Query  401   TAAAGATGGCGACGTTCTCGACAAGATGTAGAAACAAAAATCATCGCATGTTAAAGAAGT  460
             |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct  1715  TAAAGATGGCGACGTTCTCGACAAGATGCAGAAACAGAAATCATCGCATGTTAAAGAAGT  1774

Query  461   TAAAGTCTATGGACAGAGTTTCAAAGACATGTCAGCTTGTGTTTGACTAA  510
             ||||||| |||||||||||||||||| |||||| ||||||||||||||||
Sbjct  1775  TAAAGTCCATGGACAGAGTTTCAAAGGCATGTCGGCTTGTGTTTGACTAA  1824


 Score =  126 bits (68),  Expect = 2e-28
 Identities = 88/98 (90%), Gaps = 0/98 (0%)
 Strand=Plus/Plus

Query  1     ATGAACCTCCGGaaaaaaaCAAAAGTTGTTCCTAAATGTTTATCGAAGCATCTCGAGATC  60
             |||| |||| || || || ||  ||||||| |||||||||||||| ||||||||||||||
Sbjct  1579  ATGACCCTCTGGGAAGAACCAGCAGTTGTTGCTAAATGTTTATCGGAGCATCTCGAGATC  1638

Query  61    TTGGAATGGAGACAATATGAAGGCACAGAGCAAGAGAG  98
             || |||||||||||||||||||||||||||||||||||
Sbjct  1639  TTTGAATGGAGACAATATGAAGGCACAGAGCAAGAGAG  1676



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24363561295


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5